Cimp080374.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:74181102-74183951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.8e-06 0.0024 20.9 1.3 1 23 166 188 166 188 0.98 2 14 7.1e-05 0.022 17.9 4.2 1 23 194 217 194 217 0.97 3 14 6.8e-06 0.0021 21.1 1.3 1 23 361 383 361 383 0.98 4 14 0.0052 1.6 12.0 8.6 1 23 389 412 389 412 0.98 5 14 0.00099 0.3 14.3 0.4 2 23 569 591 568 591 0.96 6 14 0.76 2.3e+02 5.2 0.3 6 23 600 617 600 617 0.97 7 14 0.065 20 8.6 4.5 1 23 623 646 623 646 0.91 8 14 0.0061 1.9 11.8 3.1 1 23 654 677 654 678 0.92 9 14 0.0094 2.9 11.2 0.7 1 23 683 706 683 706 0.92 10 14 0.0029 0.9 12.8 0.4 2 23 709 730 708 730 0.97 11 14 0.0075 2.3 11.5 3.6 2 23 738 759 738 759 0.98 12 14 0.025 7.8 9.9 2.4 2 23 767 789 767 789 0.91 13 14 6.2e-05 0.019 18.1 0.3 1 23 795 817 795 817 0.98 14 14 0.0002 0.062 16.5 3.4 1 23 823 846 823 846 0.95
Sequence Information
- Coding Sequence
- atGGTGTGTAGACTGTGCTTGCAAAACAGTTCTGAAGTActtgaaatatttaataacaaagggCAAGAGTTAAAAATTGCAATGGTGATTGGTAAACATTTTTGGTTCGAGCCAAAAAATGAGGATCCCGTCTCGTCACACATATGCCACAGTTGTTGGAAAAAGGTATCTGACTTCCACGAATTTTACAAATATATCGAAAAGGCGCAGCAACTTTTGACAGTAGAAGCTATAGTTAAAACCGAATACAAATTAACAGTCTGTGATATAACAGTTGAGAACGTAGAATTAGCAAGTAACCATGAACTTGAGGAAAATATAGAAGAACAATATGAAGAGCCATTCAATATAACATCAAATGCGTTAGCAGATGATTTGAAAGACCAATCTATTGAGAAAAAGAAAGATGAACAATCAGAAGTATGTAAAAAACCCAACGCTTTTCGTGGGGCATTATACAGCCATAAACATCGTGTTCAACAATATGATGGCAAATACGTATGTAATATTTGCAAGAAATCTTATAAAATGGCAAAATCCCTTAAAGAACATATGTTAAAACACACGGGACTCTCTTTATACCGCTGTCCACACTGTAGCCGTACGTTCAAAAACATAAGCAATATGCAAATACATCGTAAACAGAAGCATCCAAAGGAGTTTGAAGAATTTCGAAAGCTAATAAAAATAAGTTCTCGCAAGAAAGAGATTATAATACCAACAATATCATCTTTATCGGATGCTGCAAAGAACTCTGGTGAATTGCCAAGTAAACATGAACTTGAAAATATAGAGAAACAATATGAAGAGCCATTTAATATAACATCTAATGTGTTAGACGAGGAAAATTATGGTGTAATAGAGTTTGAGAAAATGAAAGATGATAAAAACATATCTGCAATACATGATGACAACGAAGATGAAAGCAATTTGCAGGACCAAATTAAAGACAAAATGGaaattttgaggaaaaaaatagaatttcttaccgaaaaagcaacaacaacatacaaaGGACGCGGACGCCCACGTAAAGGTGAAATGGCTCCTTTGAAAAATGATCGACAATCTGGTGGCAAATACGTATGTAATATTTGCAAGAAATCttttaaaattgcaaaatcaCTTAAAGATCACATGTCAAAACACTCGGGACTCTCTTCGTACCGTTGTCTACACTGCAGTCGAACGTTCAACCACAGGAGCAATATGTATACACATCGTAAAAGGATGCATCCAAAGGAATTTGAAGAATTTCgaaatctaagaaaaaaaagCGCTCGCAGCAAAGAGCCTATAATACCAACAATTTTGAAAGACCAATCTATTGATATTGTAATTAATGAGAAAAAGAAAGATGATAAAGATATATCTGCAATACAAGATGACAATGAAGATGAAAGCCATATACAGttccaaattaaagaaaaagacaaaAAGAGAAGTTTGAGGAAAAACGCCACAAAATTCAGAAGGTCCACTGAAAGGAATGAAGTAGGATTTTTTACCGAAGAAACAACAACAGCATACAAACAGCGTGGACGTCCACGTAAATGTGATGTGGCTCCTTTGAAAAATAAGTCCAATTGTAATGAAGAAAAAGTTGCGGAACTCAGAATTTACAATGATGCAAGTGGATCTAATGTTGCGACACAGGAAATGTCAGAAATTATCAACCGTAAAATATCTGAATATATGAAACTGAAATGTGATGTTTGTGGTGTTGAGTTTGATACTTTTGGTCATATAAGTAATCATATGAGGTCGGTTCATGATGTCCGTCCATATGTCAAATGTTGTGAAAAGAAGTTTACCGAGCGTATGTGGTTATATGATCACATAAAGTTTCATTTAAACCCCGTTATATATAAATGTGAAAAATGTTGTAAAGTTTTTTCGGACAAACGTGCTTTTACAAGTCATAATATTTATAACCATCAGTCTGAAGATACTAAAATATTTCAATGTCCGCAGTGTCCTAGAAAGTTTGCTAGAAAGTATATTCTACAGACTCATAAAACTCTAAAGCATCATAaagtattgaaatatttttgtaacgAATGTAAAAGAGGATTTCCTTTTATGTCCGGTTTGACGTCTCACACGGCTTTGAAGCATGGAACAAAGTGTGATATCTGTTCGGAAGTAGTTAAAGGGCAAGTTGCTTTTAAACGACATCAGCAAAAACACCAAGGTATTGAACCAAAAGCTCAATGTGATCTCTGTGGTTTATGGTATAAACACAAATCAAGTCTAAACAGACATAAAAAACGGCATACGTATAAAGAACAACCAGAAGTTTGTAATATTTGTCAAAAAATCTGCGTTAGTCGTGAAGCTTTACACAGACATAAATATTATGTTCACAAACCTAAGAGCAAATACGAatgtaatatttgcaaaaaatcttataaaatagcAATTTCACTAAAAGAGCATATGGCAAGACACGAGGGAATCTCTTTGTTCCATTGTCCAATCTGTGGTAAAACGTTCAACGCGAAAACCAATATGTATAAACATCGTAAAGAGAAGCATCCAAAGGAGTATGAAGAACTTCGAAAGCTAAAAAAAGTAAGCGATCGCAGTAAAGACCCTATAATACCAACAATATCATCTTTATCAGATGGTACAAAGAAGTCTGATTGA
- Protein Sequence
- MVCRLCLQNSSEVLEIFNNKGQELKIAMVIGKHFWFEPKNEDPVSSHICHSCWKKVSDFHEFYKYIEKAQQLLTVEAIVKTEYKLTVCDITVENVELASNHELEENIEEQYEEPFNITSNALADDLKDQSIEKKKDEQSEVCKKPNAFRGALYSHKHRVQQYDGKYVCNICKKSYKMAKSLKEHMLKHTGLSLYRCPHCSRTFKNISNMQIHRKQKHPKEFEEFRKLIKISSRKKEIIIPTISSLSDAAKNSGELPSKHELENIEKQYEEPFNITSNVLDEENYGVIEFEKMKDDKNISAIHDDNEDESNLQDQIKDKMEILRKKIEFLTEKATTTYKGRGRPRKGEMAPLKNDRQSGGKYVCNICKKSFKIAKSLKDHMSKHSGLSSYRCLHCSRTFNHRSNMYTHRKRMHPKEFEEFRNLRKKSARSKEPIIPTILKDQSIDIVINEKKKDDKDISAIQDDNEDESHIQFQIKEKDKKRSLRKNATKFRRSTERNEVGFFTEETTTAYKQRGRPRKCDVAPLKNKSNCNEEKVAELRIYNDASGSNVATQEMSEIINRKISEYMKLKCDVCGVEFDTFGHISNHMRSVHDVRPYVKCCEKKFTERMWLYDHIKFHLNPVIYKCEKCCKVFSDKRAFTSHNIYNHQSEDTKIFQCPQCPRKFARKYILQTHKTLKHHKVLKYFCNECKRGFPFMSGLTSHTALKHGTKCDICSEVVKGQVAFKRHQQKHQGIEPKAQCDLCGLWYKHKSSLNRHKKRHTYKEQPEVCNICQKICVSREALHRHKYYVHKPKSKYECNICKKSYKIAISLKEHMARHEGISLFHCPICGKTFNAKTNMYKHRKEKHPKEYEELRKLKKVSDRSKDPIIPTISSLSDGTKKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -