Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821518.1:290525361-290530276[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0068 2.1 11.7 0.2 3 23 40 60 38 60 0.97

2 17 0.0029 0.9 12.8 2.4 1 23 66 89 66 89 0.94

3 17 0.38 1.2e+02 6.2 0.2 3 23 94 116 93 116 0.85

4 17 0.0051 1.6 12.1 0.1 1 22 124 145 124 145 0.95

5 17 5.9e-06 0.0018 21.3 0.9 1 23 153 175 153 175 0.97

6 17 0.00016 0.048 16.8 3.5 1 23 181 203 181 203 0.98

7 17 9.8e-05 0.03 17.5 1.3 1 23 209 231 209 231 0.95

8 17 1.6 4.9e+02 4.2 3.3 2 21 238 257 237 258 0.94

9 17 0.43 1.3e+02 6.0 0.2 2 23 700 722 699 722 0.95

10 17 0.57 1.7e+02 5.6 1.7 1 20 746 765 746 768 0.77

11 17 3.9 1.2e+03 3.0 3.0 1 21 776 797 776 800 0.88

12 17 2.8 8.5e+02 3.5 1.7 3 23 806 827 806 827 0.95

13 17 0.0031 0.95 12.8 0.4 2 21 839 858 838 859 0.93

14 17 0.00027 0.083 16.1 0.9 1 23 867 889 867 889 0.98

15 17 1.1e-05 0.0033 20.5 1.5 1 23 895 918 895 918 0.97

16 17 4.3e-05 0.013 18.6 1.1 1 23 924 946 924 946 0.98

17 17 0.00056 0.17 15.1 1.1 1 21 952 972 952 973 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0068	2.1	11.7	0.2	3	23	40	60	38	60	0.97
2	17	0.0029	0.9	12.8	2.4	1	23	66	89	66	89	0.94
3	17	0.38	1.2e+02	6.2	0.2	3	23	94	116	93	116	0.85
4	17	0.0051	1.6	12.1	0.1	1	22	124	145	124	145	0.95
5	17	5.9e-06	0.0018	21.3	0.9	1	23	153	175	153	175	0.97
6	17	0.00016	0.048	16.8	3.5	1	23	181	203	181	203	0.98
7	17	9.8e-05	0.03	17.5	1.3	1	23	209	231	209	231	0.95
8	17	1.6	4.9e+02	4.2	3.3	2	21	238	257	237	258	0.94
9	17	0.43	1.3e+02	6.0	0.2	2	23	700	722	699	722	0.95
10	17	0.57	1.7e+02	5.6	1.7	1	20	746	765	746	768	0.77
11	17	3.9	1.2e+03	3.0	3.0	1	21	776	797	776	800	0.88
12	17	2.8	8.5e+02	3.5	1.7	3	23	806	827	806	827	0.95
13	17	0.0031	0.95	12.8	0.4	2	21	839	858	838	859	0.93
14	17	0.00027	0.083	16.1	0.9	1	23	867	889	867	889	0.98
15	17	1.1e-05	0.0033	20.5	1.5	1	23	895	918	895	918	0.97
16	17	4.3e-05	0.013	18.6	1.1	1	23	924	946	924	946	0.98
17	17	0.00056	0.17	15.1	1.1	1	21	952	972	952	973	0.95

Sequence Information

Coding Sequence: atgcTTAACGTACAGCCAATAATAGCTAAAATGTCTGATCGAAATGCCGCTTCTACGTCCTCTGCCGCTGCTGATATGCTTGTTAAAATTTCCACCGATGGCCTTCCCAAATTATTTTGTCCCATTTGTAACAAAGCCTTAGTATCCCTGAATGGTTACGTCAAGCATCTTAAAAAGCATGATCCCCCTGGAGGTTTCCTCTGTCGTTATTGTGATGCCCGCTTCTGTTCGGACGACGAGTTAAAAAAACATCGTGAAACGGAACACACCACAATAGCCTGTCGGCTCTGCAAAGATGTCACATTTACCAATGAGGATGACTATAGGACACATATTAGAGACATACATCAGGGCGTGGATCgtgaaatttttaaatgtgaaaaatgtggAGCGGCTTATAAAACAATTGATCCCTATCGTAGGCATATTGAAACGGAATGTGGTAAAATCAAACCATATAAATGCGATAAATGTCCCATGGCATTTGTGACCAAATATAATTTGAAGCAACATCTGGATAATCATTCGGGAGAGTTGAAATTCTGTTGCAGTTATTGTGGCAGAAATTTTAAGCAAAAGGCACGACTGGTGGAACATGAACGGACGCACACGGGCGAGAAACCATATAAATGTGATGTCTGCGGCAAAAGCTTTTCTCATCGAGAAAGTATTGTTACACATTCGTCAATACACACTGGTATTCGTTTGGTAGAATGTAGAGGATGTACTTCTCGATTTTCCTGTCATTCCAATCTAATCAAACATAGACGCAATCGTCCAGACACTTGTGGTTTACCACAATATGATCCACCTAAAAATAGAATACGGAAACATACGTCAAGAATTCCTGCTACATTAAATCCTACTTCGGAAATAAAAGTCGTAAATGTTAACAAGATTATCAAACCTGACGATCAGGTTAGGGTAACGGCTATGAAAAAAGAAACGCCTGACAAACCGAAAACAAAACCTACAGCCAGAAAAAGTACTGGTGGTGTAGCTAAAACAGCAACAACACCACCAAATCGAGTGTCCAGAAAAAGGGAAGCCTCCAAgaaaaaagttatagattttgaTGATTTAGATGATGAGGATTTTAAAGTGGAGAAATTTGAAGTTGACGATGACGATGAAGAATTTTTAATAGAACGTAAAGAAAAACCAAAAGTTATACAAAATAAGATTGATGATAAGTTGGCTTTACGACCTTCACCTTCGAAACGGGATGAACCACTTCAAAATCAAACTACCACCAATTGGTCGGATGATAGTGATGATGATTATGTACCAGATTTTGAACCCGAAGATTCCGATATTGATGATTTACCACAAACAAATGATGTACAGTTGCCAATGCCTACTATTACTATCAAACGAGAAATGtacgatgacgatgatgatgaggaGGAAAAAGACATTGACATAACCACCAATATACAAATTGAGCCGTTAGGAGAATTTGAATATAATCGTTTAGATTCTTATGATGCTGATGTAAAATACGAAGATGGTGAATCAAATTTATTCGatgaaaaagataaaattttggaaCATCTATTAAATGAAAATGATTATACTCATATAGATGAAACAGAGATGAGCCAATTTAATTCATCACAGAAAAGAAAAAGATCCATCAAGGGTCGACAAAATACTATTGATACTGACGATATTTTAGAAGAAACCGAAGTGGTATTCATTAAATATGAAGATAGTGACGATGAAGACTATCATATGGAAGATATTTTAGAGGAAAAGAAGCCAGAGATACGCGAACCAACCAAGGAAGATGTTGCTGATTGTTATGTGATAGTTGAGGACATAAAACATCGGTTTCCTTCATTGAAAGATGATTGTTCGATCAAAGTGGCCAAAAACGTTCAACCCTTCTTTGCTAAATCAGAATCgatgaaaaaattcattaaaagacGTGGCAAATATCGTGTTAGGGGTCCTAGGTCTATCAAAATAGAATCCGTTGATGGTGAAGACGAAGATGTGAAACCGGATCTTAGTCGACCATATCGTTTGGCTAAAATTTCAGCTGGACAATTGAAAGAACGCATGAAACTAGCGAAAAAGCGTGACAAATGCTGGAAATGTCCCGATTGTATTAAAATATACTATATGCGTAAGCCCTATGAAAAGCATTTACGTGAAGATCATAAAAAAAACGATGAGgatattaaagaaatatttaaaaatgatgaAGTCGATATCAATACAGATGATGTTTTTAAATGTCACATTTGTGATAAAATCTATTTGATGGAGAAACGTTTAATACATCATATACCGAAACATGGACCAGATGGTACTCTCATACACAAGTGTCCCTGTTATTGTACGTTATATTTTGCTACGCGAGAGGAGGCCATCGCTCATGCCCATGACAGGCATAAAGACATATTGTGGTGTGAAATATGTAAGAAATTCATGACTGGCTGCGATGCTTTAAAATCACATAAAGCTCGCATTCATggtaataaagaatttaaaactcATCGCAATTTGATATGTACGAAATGTGGCAAGAAATTTATGGGTAGAACCCAATTAACAGACCATGAACGTTCGGACTGTGGTCGTGTGCCGCTTTACCAGTGTCAAGAATGTGGTAAATGTTTAACCACGGCTGGTATTCTCAAAACCCACATGTTATTGCATGACGATGCTCGACCATATCAATGCGATCAATGTggcaaaacttttaaaattaaagctCAATACAAGACGCATATTAAATATGCCCACAGTGATGATAAACGCTTTAAATGTCATCTTTGTCCTAAAGCTTATCCTTATCGTGAGAGTTTATTGACGCATATGTCTGTGCATACCGGCATCAAACGTTTTATGTGTAATGGTTGCGGTAAGAGATTTACTTGTGTTTCGAATCTTCAGGCTCATCGTAAGGTTCAATCTGAAAGTTGTGGTCTATTGCCGCTCAATGCTAAGGCTACCCAGTATATGGGTGTTCAGAAGGGTACATTATTAATGGGTGCTAAACCAGAGCCGGGCTTAGACTATGTTGAGACTCAAACATTTGTAGCCAAAGAAGTCTATACTCATGACATGCCCATGGCTCAGGAACTTAATTCTTATGATAGATCGTCGAAATATGATAAATCATTAAGTGATGGCTTACCCTTGAATTGTGTTACTACTGGGTCTGAACTTATACTTatgtacaataataaaaattaa
Protein Sequence: MLNVQPIIAKMSDRNAASTSSAAADMLVKISTDGLPKLFCPICNKALVSLNGYVKHLKKHDPPGGFLCRYCDARFCSDDELKKHRETEHTTIACRLCKDVTFTNEDDYRTHIRDIHQGVDREIFKCEKCGAAYKTIDPYRRHIETECGKIKPYKCDKCPMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECRGCTSRFSCHSNLIKHRRNRPDTCGLPQYDPPKNRIRKHTSRIPATLNPTSEIKVVNVNKIIKPDDQVRVTAMKKETPDKPKTKPTARKSTGGVAKTATTPPNRVSRKREASKKKVIDFDDLDDEDFKVEKFEVDDDDEEFLIERKEKPKVIQNKIDDKLALRPSPSKRDEPLQNQTTTNWSDDSDDDYVPDFEPEDSDIDDLPQTNDVQLPMPTITIKREMYDDDDDEEEKDIDITTNIQIEPLGEFEYNRLDSYDADVKYEDGESNLFDEKDKILEHLLNENDYTHIDETEMSQFNSSQKRKRSIKGRQNTIDTDDILEETEVVFIKYEDSDDEDYHMEDILEEKKPEIREPTKEDVADCYVIVEDIKHRFPSLKDDCSIKVAKNVQPFFAKSESMKKFIKRRGKYRVRGPRSIKIESVDGEDEDVKPDLSRPYRLAKISAGQLKERMKLAKKRDKCWKCPDCIKIYYMRKPYEKHLREDHKKNDEDIKEIFKNDEVDINTDDVFKCHICDKIYLMEKRLIHHIPKHGPDGTLIHKCPCYCTLYFATREEAIAHAHDRHKDILWCEICKKFMTGCDALKSHKARIHGNKEFKTHRNLICTKCGKKFMGRTQLTDHERSDCGRVPLYQCQECGKCLTTAGILKTHMLLHDDARPYQCDQCGKTFKIKAQYKTHIKYAHSDDKRFKCHLCPKAYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQSESCGLLPLNAKATQYMGVQKGTLLMGAKPEPGLDYVETQTFVAKEVYTHDMPMAQELNSYDRSSKYDKSLSDGLPLNCVTTGSELILMYNNKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -