Cimp086135.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:158288801-158301026[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0013 0.41 13.9 0.0 1 23 164 186 164 186 0.97 2 15 0.023 6.9 10.0 2.3 1 23 263 286 263 286 0.97 3 15 0.0024 0.75 13.1 0.2 1 23 292 315 292 315 0.97 4 15 9.7e-05 0.03 17.5 0.5 1 23 321 343 321 343 0.97 5 15 5.1e-06 0.0016 21.5 2.2 1 23 349 372 349 372 0.98 6 15 0.074 23 8.4 3.7 2 20 435 453 434 457 0.92 7 15 1.7 5.2e+02 4.1 0.4 6 23 467 484 467 484 0.97 8 15 0.0028 0.84 12.9 2.4 1 23 490 513 490 513 0.98 9 15 1.4e-05 0.0043 20.1 0.6 1 23 522 544 522 544 0.95 10 15 0.0058 1.8 11.9 2.1 1 23 550 573 550 573 0.89 11 15 0.13 39 7.7 1.2 3 23 579 599 578 599 0.96 12 15 0.008 2.4 11.5 1.5 2 23 608 630 607 630 0.96 13 15 3.5e-05 0.011 18.9 0.5 1 23 637 660 637 660 0.96 14 15 0.00097 0.3 14.3 0.2 1 23 670 692 670 692 0.98 15 15 1.6e-05 0.0047 20.0 1.8 1 23 698 721 698 721 0.97
Sequence Information
- Coding Sequence
- atgtgtccaaaaatAGTTTTATGTCGATTATGTCTTTGTTGCCACACTGAATTCAAAGCGTTAATTGATAAAAAAGGTCAGTTCAATGAAGAGTATGAAATcgctataaaatattttgatccaaagATCTTAACATCGCTAATATGTTTGGAATGTTGGCATCATATTGATGAATTCCATTCATTTCAACAAACGGTACTTCTCGctcaagaaaattttaaaagtgaagAAAAGCAACCAATTATTAAATTAGAAGTGGTACTATTAGACCAAGATGGCGATTGTAATCTTAAAGATGAAAGGAATATATCGGCTATTGAATCAGATAATTCAAATGGGCATGAAGTCACTACCTCTGTCGatgatattaaattaaatgaatgttTAACCATTGAAAATATAAAGTTTAAAGAAGAAACTGTTGATTACGACTTTAGTAGTAATTACTTCCACCATAATActgttgaaaatgaaaattgggacaataaatttaaatgtacCATATGTGATATCAACTTTATGAACCCCGAAGGATTAAGTGAACACGCAGGTACACATACAGAGCCAGATAATTGTGATAAATCTCTAATGTCGATAATAGATTACGACCCTGATGGCATAAGTGATTATGATACATTTAGTACCAATGATGAAATCCAATTGTTTGAGAGTCCCATAAAAAAATCAccaacattaaatttaaaatctaaagatGAAGACATTGGTCCTGATcatgaaaaaattactttaaaacaaCATAAGACAATCGATCAAGGTAAGGGAAAATTCAAATGTTCCTTGTGTAATGCAGACTATAGGTATACTCAAGGACTTTGCCAACATATGAACAATATCCATAAAATAAaacgcaaatatgaatgtgttcTATGCGATGCGGAATATAAGCATTCCGAAGGATTAAGTGAACATATGAATAACATCCATAAAAGCGAAAATAAATTTCAATGTAACATTTGTGGTAGGGAATATAAATACGCCCATGGGTTACAAGAACATGCAGTCACACATAACAAGCCGGCTTTTTATCAGTGTCCCCATTGTCCGGCAAAGTTTAGAAGAAAAACAAGTGTTCGTCGTCATATTAAAAGTATACACCCTAAAGAAACTGAAGAGAATAGTTCTAATTCAAAAAACCCAATAGAATTGGACGATTTCGAGTCTGTAAAAAAAGATAAAGAGGATGGCATTAAATCTGACGTTTTAGATTCaatcaaaaaacacaaacataCTCAAAAGGCTAGTGAGTGTGATGCCTTTATAGCTAAATGGAAAAAAGAGTTAGAATGTGTTATCTGTCAAAATACATTTAGTAATTACAGTTTATTGCATCGTCATTTCAAATGTGAACATTCCAGTTATAAATTTTACATACTTTGCTGTGATCATAAACTAACTTCGCGTTGGCAATTAGTCGAACACATTCAACTACATATGGATCCAAATgcatttaaatgtaaaatatgtGGAAAATGTTCCCTCGATGGCCAATCATTAAAAAATCACATCCGCAGGTTACATAGTGACAGTGGTAAAGAACGTCCATTTCAGTGTAAAGTTTGTGATAAACGTTTTGTAACCAGAACCGAATTGAATGTACACTCTGACATTCACAGCACTGACAGAAATCATATTTGTAACTTATGTGGTAAAGCGTATACTAGCGAACAACGTCTTAGGAAACATGGGCACAATGCTCATAATGCTCGGCGACTGTGTGACCAATGTGGTAAATCTTGTCATGGTATTTACGCATACGAACAACACATGGCTGAACATGCTGGAATTCAAATACCTAAATGGCCATGTAATGTGTGTGGTGCCCAATTGAAATCACGCATGACTTTAAATCAACACAAGAGAACGTGTCATCGTGATAGCTCCACTGTTTACATATGCAGTGAATGTGGTAAAATTTATGccactaaaaattatttaaatctgcATAAGAGAAATGTCCATGGAGGTAAAGGGgaacttgaaaataaatttagatgTGCCATATGTTTGAAAGGATTCAAATCTCCCCTCTTATTGCGTGAACATACTGCAACACATACTGGGGAGCCCCTTTATCAGTGTCCCCACTGCCCGCTAACAATCAGAACAAATGCAAATCTTTATCGTCATATGAAAAATAAACACCCAAAAGAATTTATGGAGTCTAAAAACAACCGAACTAAACCAAGATCTAAAGTTGATTTGAGTTTAATTGTACATGAGATTGTTATTTAA
- Protein Sequence
- MCPKIVLCRLCLCCHTEFKALIDKKGQFNEEYEIAIKYFDPKILTSLICLECWHHIDEFHSFQQTVLLAQENFKSEEKQPIIKLEVVLLDQDGDCNLKDERNISAIESDNSNGHEVTTSVDDIKLNECLTIENIKFKEETVDYDFSSNYFHHNTVENENWDNKFKCTICDINFMNPEGLSEHAGTHTEPDNCDKSLMSIIDYDPDGISDYDTFSTNDEIQLFESPIKKSPTLNLKSKDEDIGPDHEKITLKQHKTIDQGKGKFKCSLCNADYRYTQGLCQHMNNIHKIKRKYECVLCDAEYKHSEGLSEHMNNIHKSENKFQCNICGREYKYAHGLQEHAVTHNKPAFYQCPHCPAKFRRKTSVRRHIKSIHPKETEENSSNSKNPIELDDFESVKKDKEDGIKSDVLDSIKKHKHTQKASECDAFIAKWKKELECVICQNTFSNYSLLHRHFKCEHSSYKFYILCCDHKLTSRWQLVEHIQLHMDPNAFKCKICGKCSLDGQSLKNHIRRLHSDSGKERPFQCKVCDKRFVTRTELNVHSDIHSTDRNHICNLCGKAYTSEQRLRKHGHNAHNARRLCDQCGKSCHGIYAYEQHMAEHAGIQIPKWPCNVCGAQLKSRMTLNQHKRTCHRDSSTVYICSECGKIYATKNYLNLHKRNVHGGKGELENKFRCAICLKGFKSPLLLREHTATHTGEPLYQCPHCPLTIRTNANLYRHMKNKHPKEFMESKNNRTKPRSKVDLSLIVHEIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -