Cimp006565.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963682025.1
- Location
- OY821517.1:49424265-49432308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00047 0.14 15.3 1.7 1 20 134 153 134 154 0.95 2 12 8.1e-06 0.0025 20.9 0.4 3 23 206 227 204 227 0.93 3 12 0.042 13 9.2 0.1 1 23 233 255 233 255 0.95 4 12 1.6e-06 0.00049 23.1 2.0 1 21 262 282 262 283 0.95 5 12 4.5e-05 0.014 18.5 3.0 3 23 296 316 294 316 0.96 6 12 9.3e-06 0.0028 20.7 4.3 1 23 327 349 327 349 0.98 7 12 8.2e-05 0.025 17.7 0.8 1 23 355 377 355 377 0.97 8 12 3e-05 0.009 19.1 1.3 1 23 383 405 383 405 0.99 9 12 2.7e-06 0.00082 22.4 1.6 1 23 411 433 411 433 0.98 10 12 5.4e-05 0.017 18.3 2.3 1 23 437 459 437 459 0.97 11 12 0.00076 0.23 14.7 0.6 2 22 473 493 472 496 0.91 12 12 0.27 82 6.7 0.3 3 23 511 532 509 532 0.94
Sequence Information
- Coding Sequence
- ATGAATTTGAAAGAAGAGAAACTGGTCAGTAAACCCCCCACCGCCACCAAACGATCCAATTCTGGTGTCAAAATACTCAATGATGAAAAAATTTCGGCACCCTTACCTTTGGTAGTAATGACATCGGTTCCCCTGTCACCGCCCAAGCAAATGACCTTGTCCATTGCCAAACCCAAGGTACTGAAACAAAAGAATATGGATCATTATGTGATGAAAACGGTAAAAGGTGAACAAAATGCTGAAGGTTTAGACGAAGGTGAGACTATCGATTTTATATTGGCGGAGAATAATGACGAGGAGCAGGGCACAAAGTGTAGTGGAGAGATAACGGAGGAATTACATTTGAGTGATGATGATCAAGATTCAGCATTTACGGGATCAACTCAAGAGATCGTTGAACATGTTTGTGGGAAATGTTTTAAGACTTTTAGGCGTTTAAAGGCTCTAAAAAAACATCTAGACTTTTGCCGTTTTGATAGTGGTTATCATTTACGGAAAGCTGAGATGTTAAAGAATTTGGAAAAGATCGAAAAAGATGCTATTATTATGGAAATGAAAGATGTATGTTTTTGTTGTGGAGAGAGCTACGATACATTTCATTTGGGTCACATTAATTGTCCCGATTGTCCGAAATCTTTTAAAACTCAAATGAGCTATGAACGACATATATTCATAACCCATTCGGAATTGGATAATTATCCGTGTAGCATTTGTAATGCCAAATTACGTAGTGCTAATCTATTAACGTTACACGAGGAACAACATCGTGTACGAGGTAAACCATTTGCATGTAAAATTTGTGGTAAAGAATTTACACGTTCCTATCATTTGAGTCGTCATCAGAAGTACTCATCGTGTTCGGCAAATGAAAATGATACTATGCATTGCAAGGTTTGCAATAAAGCATTCTATCGTTTGGACAATTTACGATCTCACCTCAAGCAACATTTGGGTACTAAACCTACTAAGAAATCGGAGTATATGTGTCCGACttgtaaaaaatgcttttatagtTTGTCTACTTTAAATATTCATACTCGAACTCATACGGGAGAGAGACCATTTGATTGtgatttatgtgaaaaaaaatttccctCATTGGTGGCTTTGAAAAAGCATAGACGTTATCATACTGGCGAGAAACCCTACACTTGTACACTGtgcAAACAATCATTTGCTGTTAAAGAAGTTTTAAATCGTCATATGAAACGCCATACTGGCGAGAGACCACACGTTTGTAGTGAGTGTGGCAAGACTTTCATACAAGGAACGCAATTACGTACTCACATTAAGACCCACATCAGACCACACGAGTGTCAACAATGTCCGGAAAAATTCAAAACGGAAAAACAATTGGAGAGGCATTTAAAAGAACATGCTGTTTTGAAAAGAAGAGGAAGAGCTAAACTGGACAATAAATGTGATATAtgtaaaaaaggttttaaaacagaACTCGAGTATAATCAACATATGAAAAATGGTGTACATTTAAcTCCTGCTCAGAAACGTAAATTAAAAAATCGAACTGACTGTGCTGTTTGTAAAGAAAACTTCGATActgtaaaaaatttacaatttcataTACTTAAGGTACATCAAGAAGATCCCGAAACATTTCTTAATGAAGAACCCTTTGCCAAGACAAACAGCGAAGACGTCGATTCATCATTAATGCCAGCTCCCAAAGTTATTAAAATTGAAGATGCTCAGGGTCAGCGTATTGAATTTGTTACCACCAATAGTAAGGGACAAATATTAAACACAAATGTCCAGCGCTTAAACCCACAACAAATAAAGCCGGATATAGGAGATTCTCCGAACAAAGTTCGAATTTTAGAAGAATATATATTAGATGATGGACCCTCTACATCAACTGCTAGTGGCaagcaaacaatatttttatcgAATGAAGCATTTACGGTTATACCTTTGGAATCGGATGGTGGTATTATACAACCGATTACCACCAATACTATACCGGCTAAGTACATTAGTCCTGAATATAAAAAAGAACAACGTAAAACGTTAGCTCAAAGCTTGGCGGCCGCCATAGCCGATGATCAATTAGTGAATTTTAACGAAGAAGATGAGTTGACCGaagaagatttaaaaattaaagataatgtTAGTAAATTACTTGATATGCTAGTGGATAAAGCAACACTAAACAAATTTGGTTGGCCAGATATATCGGAAGAAACGGTGCTCTGCAAAGTAATCGAAAATTGTGGCCATGATCTAGTTAAAGATCAATATAATTACTCTTCTTGGGATTATGCCAGTCGTATGCGTCAATATGTTAAATTACTATTCACTCTAGTTATACAGAATGATTCCATTAAGGAACTATTAAACAATTATCCCATTGATGAAGTCATTGAATATGTTTTAGGGAATGACGATGATGACGAAGAGGACGAAGCTGCTAGAAAAGGCGACGCAGAAGAtgttaacaaaacaataaaacgtGAAGatgaaaagtaa
- Protein Sequence
- MNLKEEKLVSKPPTATKRSNSGVKILNDEKISAPLPLVVMTSVPLSPPKQMTLSIAKPKVLKQKNMDHYVMKTVKGEQNAEGLDEGETIDFILAENNDEEQGTKCSGEITEELHLSDDDQDSAFTGSTQEIVEHVCGKCFKTFRRLKALKKHLDFCRFDSGYHLRKAEMLKNLEKIEKDAIIMEMKDVCFCCGESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSELDNYPCSICNAKLRSANLLTLHEEQHRVRGKPFACKICGKEFTRSYHLSRHQKYSSCSANENDTMHCKVCNKAFYRLDNLRSHLKQHLGTKPTKKSEYMCPTCKKCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCTLCKQSFAVKEVLNRHMKRHTGERPHVCSECGKTFIQGTQLRTHIKTHIRPHECQQCPEKFKTEKQLERHLKEHAVLKRRGRAKLDNKCDICKKGFKTELEYNQHMKNGVHLTPAQKRKLKNRTDCAVCKENFDTVKNLQFHILKVHQEDPETFLNEEPFAKTNSEDVDSSLMPAPKVIKIEDAQGQRIEFVTTNSKGQILNTNVQRLNPQQIKPDIGDSPNKVRILEEYILDDGPSTSTASGKQTIFLSNEAFTVIPLESDGGIIQPITTNTIPAKYISPEYKKEQRKTLAQSLAAAIADDQLVNFNEEDELTEEDLKIKDNVSKLLDMLVDKATLNKFGWPDISEETVLCKVIENCGHDLVKDQYNYSSWDYASRMRQYVKLLFTLVIQNDSIKELLNNYPIDEVIEYVLGNDDDDEEDEAARKGDAEDVNKTIKREDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893007; iTF_00716952; iTF_01165790;
- 90% Identity
- -
- 80% Identity
- -