Cimp105319.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:136368542-136372508[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0026 0.81 13.0 0.2 1 23 367 390 367 390 0.93 2 12 0.00028 0.085 16.0 2.7 2 23 393 414 392 414 0.97 3 12 5e-05 0.015 18.4 0.2 1 23 421 443 421 443 0.99 4 12 3.4e-07 0.0001 25.2 1.3 1 23 449 471 449 471 0.99 5 12 0.0013 0.4 13.9 3.6 1 23 478 500 478 500 0.97 6 12 6.7e-06 0.002 21.1 1.8 1 23 506 528 506 528 0.97 7 12 6e-05 0.019 18.1 0.2 1 23 534 556 534 556 0.97 8 12 2e-05 0.006 19.7 0.7 1 23 562 585 562 585 0.97 9 12 0.0073 2.2 11.6 2.3 1 23 591 614 591 614 0.93 10 12 2.5e-05 0.0076 19.3 1.2 1 23 620 642 620 642 0.98 11 12 0.00018 0.054 16.7 0.5 1 23 648 670 648 670 0.96 12 12 0.002 0.62 13.3 0.2 1 22 676 697 676 700 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGCAAGGTGTTACTTGTGCGATCATGAATTTGTAGAAGGTGAAGAGCCTTGGTTAATGTTCGAGCAACGTCTACGTGAAGATGGACAAATTGAATGTTCTTTGGCCGATCTATTGGGTATGATTTTGCAAAAGGATTTACAAGAATCCACGGCACATTCAACACTGTTGTGTGATTCCTGTAATGCTGATGTTGTGGAATATGAAAGCCTCGAGAAACGTTACTCTCAATTAAGAGAACGAATTTTGAGTTCATACAAAGATAATAtaacaattcaaaatttaaacGATATTATACAAGAAGCTAATGATACGATAGAAAATGACAATGTTTTCAATGAATTTAAAAGTCATGTAGATAACGCTACCAATTTAGTTCACCAAGAATATATTGGTATATCTGAAATGGATTTGGTAGAAGAAATTCCAGAGGACGATGATGATGAAGGGAAGGAAGCTTCTAAAGATGTAGAAGCCTCAAGTGGAAATTTAAGTGGACTAGTAAATGAGGATGTTGTCCATTATGACAATGAATGTACAGAAATACCTGGACAAGAAATTCCCGAAATTATAACCGATAATTTTGATTTTGCTGCTTTCAATGAACACGTTGCCCAAAATTCTTTGCCCTCTGGTGTTTTGAATTTATCAGATGGTCTTGTCAATTTAGCTGTTTCCGAAAAATCTTTAGACGTACAAGATATTTCGTTGGAAGGTCAAGATATTATTGTGTATGATGTTCATTCTGACCAGATGCAGAAAGCTGATTTAATAAATCAACATGAAAATAATAAGAACCAAGACTTGGAGACTTATAATAGCGCCGGTGATGATGATCTGAATTTCATTATTAGTGCCGACATTTTCACAAGTGGAGCCAATCGAGACGATTCCCAACAACATAATGTCGTCGAACTGATAGTATCTTACAATAATAAGCAACAACAGGATGCTGATCATGTTGATACTGGCCCAGAACCAGTATGTAAACAACAAGGATTATATTTCGTATGCCTTTTATGTGAAATATCACAACAATTTGAACATCAAGCGATGATAGAGCACTTTCAAACATTTCATAATTCAAAATTCTATTTGTGTGACCAGTGCAACAAGGGTTATGCCAAAAGACAAGATCTTAAAGTACATACAGAAATAGGTCATGTTATAAAATGTGAAATTTGCGAGCGAACATTTACAAATCATCGTCTGTATCGAATACATAAACGAATTCACAACAATAGTGCCAAGCCATACGAATGTTCGGTTTGTCAGAAGATGTATGTCTCCAGGGGAGTGCTAGAGGAACATATGAATACACACACCGGCGTTCGGCCTTTTAAATGTACGGATTGTCCAAAGGACTTTGCATCCAAATACACCCTGCAAACGCATATGAAAATCCATAAAGAACGACCCAGACCACATCAGTGCGACCAGTGCGGTAAACAATTCTTAAATCAACAAAATCTGAATCAACACAAAAAGTTACACGTCCTAGTGAAGGCCTTTGAGTGTGATGTCTGCTCGAAAACATTCACTACCCAACATAGTCTGCAGGTTCATAAGATAGTACATTCGGGCCAGAGACCATTTATTTGTCGTATTTGTGGCAAATCGTTTGCCCGGCGACCGGAAATCAAAGATCATGAACGTATTCATACTGGAGAAAGGCCATACAAATGTGAATTATGTCCCATGGCCTTTGCACAGCGTTCCAATTTGTCGAGTCATAAGAAATCAACACATTTAAATGAGAAACTACACAAATGTGATCAATGTCTGCGATCATTTAAACGTAAACGTTTATTGGACTATCATGTGCAGGCCATTCACACGGGTGAACGACCACATAAGTGTGAAGTCTGTGGAGCAGGTTTTGTTTATCCCGAACACTATAAAAAACATATGCTCATACACAGTGGCAAGAAACCATTTGCTTGTGAGGTCTGTGGCAAACAATTCAATAGTCGTGACAATCGAAATGCTCACCGTTTTGTCCACAGCGATAAGAAACCGTACGAGTGCATGGAATGTGGTGCTGGGTTTATGCGCAAACCCCTACTGCTGACACACATGAAACAAACGAAACATGTCAACGACACAATTATTATCAATCAACCGCAATTTACCCAACATCAACCAATGGAAAGTTCCACCATTACTACCCTAACCAAATGTGAATTTGAAGATAATGAAGTGGACATTGATAATGATTTACAGTCGGAAGGGGAGTCTGAAGAATCAttggaaaaaattatgtttaaagctCAACAGCTATTAGCAGGCCATGGTTCAGTCTCGTCCATTGTTGAAGACGAAGATATCGAACTCAATGAAGATGTGATTACTCCAGTCAGTGATCATTTGATTAAAGATGAGTTGGGCGATGTTAAATATTTGCAATTTGAAGACTTAGATCGTGATGGTCATCAAACACTGACGTGGGTTGATATGGCAGGAGATGATAAAGTTTAA
- Protein Sequence
- MESARCYLCDHEFVEGEEPWLMFEQRLREDGQIECSLADLLGMILQKDLQESTAHSTLLCDSCNADVVEYESLEKRYSQLRERILSSYKDNITIQNLNDIIQEANDTIENDNVFNEFKSHVDNATNLVHQEYIGISEMDLVEEIPEDDDDEGKEASKDVEASSGNLSGLVNEDVVHYDNECTEIPGQEIPEIITDNFDFAAFNEHVAQNSLPSGVLNLSDGLVNLAVSEKSLDVQDISLEGQDIIVYDVHSDQMQKADLINQHENNKNQDLETYNSAGDDDLNFIISADIFTSGANRDDSQQHNVVELIVSYNNKQQQDADHVDTGPEPVCKQQGLYFVCLLCEISQQFEHQAMIEHFQTFHNSKFYLCDQCNKGYAKRQDLKVHTEIGHVIKCEICERTFTNHRLYRIHKRIHNNSAKPYECSVCQKMYVSRGVLEEHMNTHTGVRPFKCTDCPKDFASKYTLQTHMKIHKERPRPHQCDQCGKQFLNQQNLNQHKKLHVLVKAFECDVCSKTFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGERPYKCELCPMAFAQRSNLSSHKKSTHLNEKLHKCDQCLRSFKRKRLLDYHVQAIHTGERPHKCEVCGAGFVYPEHYKKHMLIHSGKKPFACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHVNDTIIINQPQFTQHQPMESSTITTLTKCEFEDNEVDIDNDLQSEGESEESLEKIMFKAQQLLAGHGSVSSIVEDEDIELNEDVITPVSDHLIKDELGDVKYLQFEDLDRDGHQTLTWVDMAGDDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -