Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821520.1:235677993-235680159[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2e-05 0.0061 19.6 2.9 3 23 220 240 219 240 0.97

2 12 0.00016 0.049 16.8 1.2 1 23 246 269 246 269 0.96

3 12 0.0014 0.42 13.8 0.0 1 23 281 303 281 303 0.97

4 12 0.00069 0.21 14.8 1.5 1 23 308 331 308 331 0.98

5 12 1.6e-05 0.0049 19.9 0.4 1 23 337 359 337 359 0.98

6 12 1e-06 0.00032 23.7 0.8 1 23 365 387 365 387 0.99

7 12 9.3e-05 0.029 17.5 3.1 1 23 393 415 393 415 0.95

8 12 6.7e-06 0.0021 21.1 0.6 1 23 420 442 420 442 0.98

9 12 7.4e-05 0.023 17.9 1.4 1 23 448 470 448 470 0.96

10 12 8.6e-05 0.026 17.7 7.3 1 23 476 498 476 498 0.99

11 12 3.4e-05 0.01 18.9 0.5 1 23 504 526 504 526 0.97

12 12 0.00087 0.27 14.5 3.0 1 23 532 554 532 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2e-05	0.0061	19.6	2.9	3	23	220	240	219	240	0.97
2	12	0.00016	0.049	16.8	1.2	1	23	246	269	246	269	0.96
3	12	0.0014	0.42	13.8	0.0	1	23	281	303	281	303	0.97
4	12	0.00069	0.21	14.8	1.5	1	23	308	331	308	331	0.98
5	12	1.6e-05	0.0049	19.9	0.4	1	23	337	359	337	359	0.98
6	12	1e-06	0.00032	23.7	0.8	1	23	365	387	365	387	0.99
7	12	9.3e-05	0.029	17.5	3.1	1	23	393	415	393	415	0.95
8	12	6.7e-06	0.0021	21.1	0.6	1	23	420	442	420	442	0.98
9	12	7.4e-05	0.023	17.9	1.4	1	23	448	470	448	470	0.96
10	12	8.6e-05	0.026	17.7	7.3	1	23	476	498	476	498	0.99
11	12	3.4e-05	0.01	18.9	0.5	1	23	504	526	504	526	0.97
12	12	0.00087	0.27	14.5	3.0	1	23	532	554	532	554	0.97

Sequence Information

Coding Sequence: atgactACAGTTTTATTGGGTCGCATTTGTCGTACCTGTTTAAAAAAATCTTCCAAAATGCATAAATTACGCGAATATATTGCTGACGATTTAAAAATTGAGGACATGCTCGACCAAGCCATACCCAACTTCGATCTGGAACTGGAGGATACACCACTGCCGGTAGAAATTTGTCAAGAATGTTTAGACAAGCTGCGCGTAGCCTATGACTTTCAACAAAAGTGCATGGAAAGTAATCAACAATTAAGGGTTATCTTAAGCCAAGATGAAAATGAAGTTGATAATGTGGCAACAGAGTTGCATGATTTAAGCAACACCGAAGATTTCCTAGATGAAACTGATATTTTaatggataatttaaaaaaagaacttgTAGAAGAGCTTAAATCAAATGGAACCTCCAATCATCTACATGGTCCTAGCTCGGACGATGCCTCGAGTCCAGTGTACCAAATAGATCCTGTTAAACTTGAAATTGAATTGGTCGATGAGAAAGATGACGATTTTAGTAATAGTAGTTCGGAAGAATATTGGCCTAATGATGAAAAAGATAGTGAAGGcaatttatttgaaaatgtgaaaaaacctACCACAAATATTAAGCCCAAAAGAAGATATCTTAGAAAAGCGCCTTTAAAACCAGCCAGTAGTAAAATATGTGCACAATGTAATAAATCTTTTTCCAAAAGGCATCTCTTAACACGTCATATGTCGGTGCATTCAATGGAAAACCCATTCGTCTGTAATATATGTCAATTTCGTTTTCCCAGCGAAAGGCAGCTGAAAACACATATAACAAGTAAACATATGGGCATCGAGATAAGTCTAGCTGGTGGCCCTTATCCCTGCACAGATTGTCCTATGATATTTGAACAAACCAGAGCCTTGGCTGCTCATAGAGTTATGCATTTGGAAAGAGATTTCAAGTGTCAAGTTTGTGGTATAAATTGTAAAACAATGGCAGCAGTAACCAGACACATGAACAGTAAACATCCTGATGTGTTGCCATACAAATGTGAACTGTGTGATAAAGCTTTTCCGGTCGAAACTCATTTAAATGATCATATCAATGAGCATTTGggacagaaaaaatataaatgtgaaatgtgtgaaaaaaGTTTTCCCAACACCACGGCTTTAAAAGATCACTTACGCACTCATACAGGTGAATCACCATTTTTATGTTCCCACTGCGGTATGTCATTTAAAACGTCTAATGTTCTGCGACAACATTTACAACGGCATGGCGAGAAAAACTTCCAGTGTCCGGAATGTCCAATGAAATTTTATGCTAAAGTAAACTTAACCAAACATATGACCTCCCATTCCAAAGTAAAACGTCACGTTTGCGATGTGTGTGGTTCGGCTTTCACCAGACAGGATACGTTGAAGGCTCACAAATTTAAACATACTGGCGAGAGACCGTTTAAATGTGATGACTGTAATCTATGCTTTGTTTTTAAACGACATTTAAAAAGACACCGCATCACACATACTGGTGAAAAGCCTCATATGTGTACATATTGCGATCGTGCTTATGCGGCCAGCGGAGACTTGGTAAAACATTTACGTACTCATATTGGTGAGAAGACTTATTTCTGTGATGAATGCCCGGAATCGTTTAAATATTGTAATGACTTGAGAGATCATAAAAATCAACATTATAAAGAAAAGCTAGTATTAGAGCAAATTAAAGAAGTTACAGATTTTCAAAGTGATAACGACATTCTCGTACAAAATCCAAATGTTGAACATAACGTAATCCCAAAAAGAATTGGGTTGATGAATGAAAAGGATAAGGAgttagaatattaa
Protein Sequence: MTTVLLGRICRTCLKKSSKMHKLREYIADDLKIEDMLDQAIPNFDLELEDTPLPVEICQECLDKLRVAYDFQQKCMESNQQLRVILSQDENEVDNVATELHDLSNTEDFLDETDILMDNLKKELVEELKSNGTSNHLHGPSSDDASSPVYQIDPVKLEIELVDEKDDDFSNSSSEEYWPNDEKDSEGNLFENVKKPTTNIKPKRRYLRKAPLKPASSKICAQCNKSFSKRHLLTRHMSVHSMENPFVCNICQFRFPSERQLKTHITSKHMGIEISLAGGPYPCTDCPMIFEQTRALAAHRVMHLERDFKCQVCGINCKTMAAVTRHMNSKHPDVLPYKCELCDKAFPVETHLNDHINEHLGQKKYKCEMCEKSFPNTTALKDHLRTHTGESPFLCSHCGMSFKTSNVLRQHLQRHGEKNFQCPECPMKFYAKVNLTKHMTSHSKVKRHVCDVCGSAFTRQDTLKAHKFKHTGERPFKCDDCNLCFVFKRHLKRHRITHTGEKPHMCTYCDRAYAASGDLVKHLRTHIGEKTYFCDECPESFKYCNDLRDHKNQHYKEKLVLEQIKEVTDFQSDNDILVQNPNVEHNVIPKRIGLMNEKDKELEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -