Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821520.1:235515301-235518238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.002 0.62 13.3 0.2 1 23 179 201 179 201 0.98

2 14 0.0004 0.12 15.5 3.5 1 23 243 265 243 265 0.99

3 14 6.1e-07 0.00019 24.4 0.8 1 23 318 340 318 340 0.96

4 14 0.00012 0.037 17.2 1.6 1 23 346 368 346 368 0.96

5 14 9.6e-06 0.0029 20.6 0.3 1 23 381 403 381 403 0.98

6 14 0.014 4.4 10.7 0.3 1 23 412 435 412 435 0.95

7 14 0.038 12 9.3 6.0 1 21 441 461 441 463 0.94

8 14 0.0098 3 11.2 0.2 2 23 470 491 469 491 0.97

9 14 1.5e-05 0.0047 20.0 0.5 1 23 497 519 497 519 0.96

10 14 0.00087 0.27 14.5 3.3 1 23 525 547 525 547 0.99

11 14 0.00033 0.1 15.8 2.8 1 23 553 575 553 575 0.96

12 14 8.2e-05 0.025 17.7 2.0 1 23 581 603 581 603 0.99

13 14 9.3e-05 0.028 17.5 1.8 1 23 609 631 609 631 0.98

14 14 0.00013 0.038 17.1 0.3 1 23 637 659 637 659 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.002	0.62	13.3	0.2	1	23	179	201	179	201	0.98
2	14	0.0004	0.12	15.5	3.5	1	23	243	265	243	265	0.99
3	14	6.1e-07	0.00019	24.4	0.8	1	23	318	340	318	340	0.96
4	14	0.00012	0.037	17.2	1.6	1	23	346	368	346	368	0.96
5	14	9.6e-06	0.0029	20.6	0.3	1	23	381	403	381	403	0.98
6	14	0.014	4.4	10.7	0.3	1	23	412	435	412	435	0.95
7	14	0.038	12	9.3	6.0	1	21	441	461	441	463	0.94
8	14	0.0098	3	11.2	0.2	2	23	470	491	469	491	0.97
9	14	1.5e-05	0.0047	20.0	0.5	1	23	497	519	497	519	0.96
10	14	0.00087	0.27	14.5	3.3	1	23	525	547	525	547	0.99
11	14	0.00033	0.1	15.8	2.8	1	23	553	575	553	575	0.96
12	14	8.2e-05	0.025	17.7	2.0	1	23	581	603	581	603	0.99
13	14	9.3e-05	0.028	17.5	1.8	1	23	609	631	609	631	0.98
14	14	0.00013	0.038	17.1	0.3	1	23	637	659	637	659	0.97

Sequence Information

Coding Sequence: ATGTCTTGTGATCTAATGACAAAGTGTCGCACTTGCTTATGCGATTCACACATATTTCACCAACTTAATGATTATGTGGATGAAAATTATATCATTCTGGAAATGTTGGATGGTATAGTGCCTCAGATTGATATTAAGACCTCATCGAACTATTCCAGTCTGGTGTGTCAATCGTGTGTGGATAAACTAGTGGCCGGTTATAAATTTCAACAATTGTGTATAGAAACCAACAAACGTCTTCATGATTTAATGGGCTTTTCCATCTTTGAGACTGCACCTTTGACAGGAGAAGCtacttttaaaatgaaaatagaaattgGTGAAGAGGCTTGTTTTGAATGCGAATTAAATCCCGAAAAATTAGAGGAATCATCTGGCAACGATAGTGATTGGGTACCGGCTCATAATACGGATAACGATACTGATTCCAGCAATGAAAAACTTTCCgttttaaaagaaagaaaaacccAAAAATCTTCTTCAAAATCTGACGAAGGGCaaagACCCAGCAAAAATAATCGTCGTAAAGAACAATTCCCTTGTAGCGAATGTGGTAAAGTTATTTTTGCTGAGAAAACCTTTAAAGCCCATATGTTAACGCATGAAAATGAAGATATAAATCAATCGAATGTTGAAGTTAACAATGAAAGAAAAGATGAaaataatattgatattaaagaacagaattattgtaaagaaaattatattgtcAAGGGCACACAAAAATTTCAATGTTCCGATTGTGCCAAATGTTTTGAGAAGAAAGCTTTTTTATCATCTCACTATAGGGTGcatacgaaaaaaattaaaaataaattgaataaagaCACAAATAATGGAGATGATGTCGATATAGATGATTCAGAtGACAATTCCGAAAAAAATGCGTTTACAAAACCTGGAGCCATGGGAgaaattgaaaaaCCCAATAGCAGCATTAAAAGAAGTAATTTTCCTTGCGAAGTTTGTGGCAAAGTTTTTGATCGCCCTTATCATCTAAAACGCCACAGTTCAGTACATTCCATTACAAAACCGCAtgaatgtaaaatttgtaaatatcgtTTTGATAGAGTTAATAACTTAAATGCTCATATGGTACAACATGACGGCCTTTTGATGCCTCAGTCACGCCCAGAAGGTTTTAAATGTCCTGATTGTCCAAGacgttttaaaataaaagctTCGCTGTCAGCACATCGCCAAATACACACCCGTAATTCGGCAGAAGCTAATTATCCATGTATGGTTTGCCAACGCAACTTTATGTCGGTGAGATCTTTAACCGAACATATTATCAATAAACATCCGGAAGTGGAAAAACACAAATGTGGCCAGTGCGATAAAACATTTGTACTTCATGATCATCTGGTGGAacatttaaattgccataaaggCAATAAAAATCTAGTATGCCTAATATGTGAAAAAGAACTTGGCAATACGAAATCTTGGAAAGAACATATGCGTACGCATAGTGGAGAAAGTCCTTATTTATGTCCACAGTGCGGTAAAACCATTCGAAGAGCAAGCAGTTTCCGTGAACATATGGAACGTCATAGAGATTTAAAGAAATATCAGTGCCCAAAATGTCCTCTCCGTTTCAACTGCCGTTCAGATCTGATGAAACATACATCAACACATACTAATGCCAAACCACATGTATGCGATTTATGTGGATCACGTTTCACGCGGACCTCTTCTCTGCGAAAACACAAGTTATTACATTCTGGAGAACGGCCATTCAAATGTGACCAATGTAGTATGAAATTTATAATGATCTATCAATTACGAAGTCACATGCGTACCCATACCGGAGAGAAACCACATAAATGCAAATATTGTAAACGTGCCTATGCCGAAGGTGGGGACTTAACTAGACATTTAAGGACTCATGTAGGCGAATATACCTATATGTGCGATCAATGTCCAATGGccttcaaaaagcaaccggaattGAAACAACATCAGTCGGAACATTATAAAATGGATCAAAAACTCGCGCAACATCATCAGCAACTACCATTGCCTACAAACAATCATAACCAACAAATTATAATAGCAGATCAAAATCAGCAATTAACGATAGCAATTCCAAATCATCAGCAAATGGCTTTGGTGGATCACCATAGTCAGCAATTGCCAAGAATTGTTGAACAAACACAGCAGCTTTCAGATATGAATGAAATTGCCAGACTAGACAATATAGATATTAATAATCTCCCATCATAA
Protein Sequence: MSCDLMTKCRTCLCDSHIFHQLNDYVDENYIILEMLDGIVPQIDIKTSSNYSSLVCQSCVDKLVAGYKFQQLCIETNKRLHDLMGFSIFETAPLTGEATFKMKIEIGEEACFECELNPEKLEESSGNDSDWVPAHNTDNDTDSSNEKLSVLKERKTQKSSSKSDEGQRPSKNNRRKEQFPCSECGKVIFAEKTFKAHMLTHENEDINQSNVEVNNERKDENNIDIKEQNYCKENYIVKGTQKFQCSDCAKCFEKKAFLSSHYRVHTKKIKNKLNKDTNNGDDVDIDDSDDNSEKNAFTKPGAMGEIEKPNSSIKRSNFPCEVCGKVFDRPYHLKRHSSVHSITKPHECKICKYRFDRVNNLNAHMVQHDGLLMPQSRPEGFKCPDCPRRFKIKASLSAHRQIHTRNSAEANYPCMVCQRNFMSVRSLTEHIINKHPEVEKHKCGQCDKTFVLHDHLVEHLNCHKGNKNLVCLICEKELGNTKSWKEHMRTHSGESPYLCPQCGKTIRRASSFREHMERHRDLKKYQCPKCPLRFNCRSDLMKHTSTHTNAKPHVCDLCGSRFTRTSSLRKHKLLHSGERPFKCDQCSMKFIMIYQLRSHMRTHTGEKPHKCKYCKRAYAEGGDLTRHLRTHVGEYTYMCDQCPMAFKKQPELKQHQSEHYKMDQKLAQHHQQLPLPTNNHNQQIIIADQNQQLTIAIPNHQQMALVDHHSQQLPRIVEQTQQLSDMNEIARLDNIDINNLPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -