Cimp093763.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cordilura impudica
Gene Symbol
-
Assembly
GCA_963682025.1
Location
OY821520.1:235556664-235559970[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00098 0.3 14.3 1.7 1 23 228 250 228 250 0.98
2 14 1.5e-06 0.00046 23.2 1.4 1 23 293 315 293 315 0.98
3 14 0.00077 0.24 14.6 1.3 1 23 427 449 427 449 0.96
4 14 0.0017 0.51 13.6 1.2 1 23 455 477 455 477 0.97
5 14 2.9e-05 0.009 19.1 3.5 1 23 494 516 494 516 0.99
6 14 0.0051 1.6 12.1 0.4 1 23 525 548 525 548 0.96
7 14 0.00083 0.25 14.6 4.9 1 23 554 576 554 576 0.98
8 14 0.00011 0.034 17.3 0.4 2 23 583 604 582 604 0.97
9 14 9.7e-08 3e-05 26.9 1.0 1 23 610 632 610 632 0.96
10 14 0.043 13 9.2 2.7 1 23 638 660 638 660 0.97
11 14 2e-05 0.0061 19.7 0.4 1 23 666 688 666 688 0.97
12 14 3.3e-05 0.01 19.0 3.9 1 23 694 716 694 716 0.99
13 14 2.5e-07 7.7e-05 25.6 0.8 1 23 722 744 722 744 0.99
14 14 0.00032 0.099 15.8 0.8 1 23 750 772 750 772 0.97

Sequence Information

Coding Sequence
atgtcTTGTGATCTCATGACAAAGTGTCGCACTTGCTTATGCGATTCACACATGTTTCACAAACTTTATGATTATGTGGATGGAAATTATAAGATTCTGGAAATGTTGGATGATATAGTGCCTCAGATTGATATTAAGACACCATCGAACTATTCCAGTTTGATGTGTCAATCGTGTGTGGATAAACTAGTGGCCGGTTATAAATTTCAACAATTGTGCATAGAAACCAATAAACGCCTACATGATTTAATGAGCTTTACCATCTTTGAGACTGCACCTTTGACAGGAGAAGCtagttttaaaatgaaaatagaaattgAAGATGAGACTTCTTTTGAATGTAAAATAAATCCCGAAGAATTAGAGGAACCATTTGACAACGATAATGATTGGGGACCGGGTCATAATACGGATAATGGTATTGATTCCAGTGTCGATGCTGAAGctagttttaaaataataatagaagTTGAAGACGACGCTTGCTTTGAATGTGAAATAAATCCCGAAGAATTAGAGGAACCAGCTGACAACTATAATGATTGGGGACCAGGTCATAATACGAATACTGATACCAGtaatgaGAATCTTTCCGTTTTAAAAGAAAGTAAAGCCCACAAATCTTCTTCAAAATCTGACGAAGGGGAAAGACACAGCAAAAATAATCGTCATAAAGGACAATTTCGTTGTAGCgaatgtaacaaatttttttttgctgaaaatacCTTTAAAGCCCACATATTAACGCATGAAAATGGAGATGTAACTCAATCGAATATTGAAGTTAAAAATGAAAGTAAAGATGAGATTAATATTGATATTAACGAacagaattattgtaaagaagaAAAAGATATAGTTAAGCCCACACAAACATTTCAATGTCCAGATTGTCCCAAATGTTTTGAGAAGAAAGCTTCTTTATCGGCTCACTATAAGGTCCATAcgaagaaaacgaaaaataaatcgaATAAAGACACAAAGAATGAAGATGACTTCGATGAAAAGGATGTGGAAAAGCTTAAGagcttgaaaaatgaaaatgaaactgaGTTGGTTATGGAGAAAGAATCTAAAGTTATTGTAAAAGAAGAAATAGAAGATCGCATGGATGACTTAGATGCTAATGCGGAATGGTTCAACAATGATTATGATGATTCAGatGATAATTCCGAAAAAAATGCGTTTACAAAAATTGGAGCCaaacatatcaaaaatatgaatttcaTTGATACGGGCATAGGAGAAATTGAAAAACCCAATAAAGTAAATGGTAATTTTCCTTGCGAAGTTTGTTGCAAAGTTTTTGATCGTCCTTATAGTCTAAAACGCCACAGTTTAGTACATTCCATTACAAGACCGCAtgaatgtaaaatttgtaaatatcgtTTTGTTAGAGCTAATATCTTAAAAGCTCATATGATACAACATGACAGTGATGGTACTGGCATTTTGATGCCTCAGTCACGCCCAGAAGGTTTTAAATGTCCTAATTGTCCaagacgttttaaaaaaaaagcttcgATGTCAGCTCATCACCGGACACACACTCGTAATGCGGCAGAAGCGAATTATCCATGTATGATTTGCAAACGTAACTTTGTGTTTGTGAAATCTTTAACAGATCACATTAGCATTAAACATCCGGAAGTAGAAAACCACAAATGTGACCAGTGCGATAAAACATTTGTACTTCATGCTCATCTGGTGGAACATTTAAATAGACATCAGGGCAATAAAAATCTAGTATGCCTAATATGTGAAAAAGAATTTGGCTATACGAAATCTTTGAAAGAACATATGCGTACGCATAGTGGAGAAAGTCCTTATTTATGTCCGCAGTGCGGTAAAACCTTTCGAAGAGCAAGCAATTTCCGTGAACATATGGAACGTCatagaaatttaaagaaatatcagTGCCCAGATTGTCCTCTTCGTTTCAACTGCCGTACAGATATTAATAAACATACATCAAAACATACTACTGCCAAACCACATGTGTGCGATATATGTGGTGCACGTTTCACCCGGGCCCCTTCTCTGCGAAAACACAAGTTAGTTCATTCTGGAGAACGGCCATTCAAATGTGGCCAATGTAGTAAGAAATTTGCAATTATCTATCATTTACGACGTCACATGCGTACCCATACCGGAGAGAAACCATATAAATGCAAATATTGTGAACGTGTCTATCCCGACAGAggaaatttaattaaacatttaaggACTCATGTAGGCGAAAATACCTATATTTGCGATCAATGTCCAATGGCCTTCAAGTATCATGCGGAATTGAAACAACATCAGTCGGAGCATTATCAAATGGTTCAAAACCTCTTGCCACAAGCACAAAAGTTATCCGATGAAGCACAACAATATGAAATGTCTGAACAAGCACATCATCAGCAACAGCCATTGCCTATACATGATCATAACCAACAAATTATAATAGCAGATCAAAATCATCAATTAACGATAGCTATTCCAAATCATCAGCAAATGCTTCTGGTGGATCACCACAGCGAGCAATTGCCAACAATTGTTGAACAAATAGATATGAATGAAGCTGCCAGACAAGACAATAATGATATTAAGAATTTCTCATCACAAGTTTAA
Protein Sequence
MSCDLMTKCRTCLCDSHMFHKLYDYVDGNYKILEMLDDIVPQIDIKTPSNYSSLMCQSCVDKLVAGYKFQQLCIETNKRLHDLMSFTIFETAPLTGEASFKMKIEIEDETSFECKINPEELEEPFDNDNDWGPGHNTDNGIDSSVDAEASFKIIIEVEDDACFECEINPEELEEPADNYNDWGPGHNTNTDTSNENLSVLKESKAHKSSSKSDEGERHSKNNRHKGQFRCSECNKFFFAENTFKAHILTHENGDVTQSNIEVKNESKDEINIDINEQNYCKEEKDIVKPTQTFQCPDCPKCFEKKASLSAHYKVHTKKTKNKSNKDTKNEDDFDEKDVEKLKSLKNENETELVMEKESKVIVKEEIEDRMDDLDANAEWFNNDYDDSDDNSEKNAFTKIGAKHIKNMNFIDTGIGEIEKPNKVNGNFPCEVCCKVFDRPYSLKRHSLVHSITRPHECKICKYRFVRANILKAHMIQHDSDGTGILMPQSRPEGFKCPNCPRRFKKKASMSAHHRTHTRNAAEANYPCMICKRNFVFVKSLTDHISIKHPEVENHKCDQCDKTFVLHAHLVEHLNRHQGNKNLVCLICEKEFGYTKSLKEHMRTHSGESPYLCPQCGKTFRRASNFREHMERHRNLKKYQCPDCPLRFNCRTDINKHTSKHTTAKPHVCDICGARFTRAPSLRKHKLVHSGERPFKCGQCSKKFAIIYHLRRHMRTHTGEKPYKCKYCERVYPDRGNLIKHLRTHVGENTYICDQCPMAFKYHAELKQHQSEHYQMVQNLLPQAQKLSDEAQQYEMSEQAHHQQQPLPIHDHNQQIIIADQNHQLTIAIPNHQQMLLVDHHSEQLPTIVEQIDMNEAARQDNNDIKNFSSQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-