Cimp093775.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:235597249-235600548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00026 0.08 16.1 0.7 1 23 237 259 237 259 0.98 2 14 2.2e-05 0.0068 19.5 2.7 1 23 299 321 299 321 0.98 3 14 3.5e-06 0.0011 22.0 0.2 1 23 436 458 436 458 0.96 4 14 0.00043 0.13 15.5 1.8 1 23 464 486 464 486 0.95 5 14 5.4e-06 0.0016 21.4 0.5 1 23 503 525 503 525 0.98 6 14 0.02 6.2 10.2 0.6 1 23 534 557 534 557 0.95 7 14 0.0011 0.34 14.1 4.5 1 23 563 585 563 585 0.98 8 14 0.00035 0.11 15.7 0.7 3 23 593 613 592 613 0.98 9 14 6.4e-05 0.02 18.1 3.4 3 23 621 641 619 641 0.95 10 14 0.044 14 9.1 1.8 1 23 647 669 647 669 0.98 11 14 0.0002 0.06 16.5 3.3 1 23 675 697 675 697 0.93 12 14 6.4e-06 0.002 21.2 2.4 1 23 703 725 703 725 0.99 13 14 9e-07 0.00028 23.9 0.9 1 23 731 753 731 753 0.99 14 14 6.4e-05 0.019 18.1 0.3 1 23 759 781 759 781 0.97
Sequence Information
- Coding Sequence
- atGTCTTGTGATCTAATGACAAAGTGTCGTACTTGTTTATGCGATTCACACATATTTCACAAACTTTATGGTTATGTGGATGAAAATTATCAGATTCTGGAAATGCTGGATGGTATAGTGCCTCAAATTGATATTAAGGCTTCATCGAACTATTCCAGTTTGGTGTGTCAATCGTGTGTGGGTAAACTAGTGGTTGGTTATAAATTTCAGCAATTGTGCATAGAAACCAACAAACGTCTTCACGATTTAATGGACTTTTCCATCTTTGACACTGCTCCGAAATTGGAGAAGACTTTCGACCCTTTGACAGGAGAACCtagttttaaaatgaaaattgaagttgAAGATAGCGCTTGTTTTGAATGTGAAATAAATCCCGAACAATTAGAGGCACCATCTAACAACGATAATGATTGGGGACCGGGTCATAATACGGATAACGGTACTGATTCCAGTGTCGATGCTGAAGctagttttaaaataataatagaagTTGAAGATGACGCTAGCTTTGAATGTGAAATAAATCCCGAAGAATTAGAGAAACCAGCTGACAACGATAATGATTGGGGACCGGATCATAATACGGATAACGATACTGATTCCAGtaatgaAAAATTGCCCGTTTTAAAAGAAAGTAAAGACCACAAATATTCAAAATCTGACGAAGGGGAAAGACTCAGCAAAAACAATCGTCGTAAAGGACAATTTCGTTGTGGCGAatgtaacaaagttttttttgctgaaaaaacCTTTAAAGCCCACATATTAACGCATGAAAATGAAGATATAACTCAATCGAATATTGAAGTTAAAAATGAAAGTAAAGATGAGATTAATATTGATATTTACGAacagaattattgtaaagaaaatgaTATTGCCATACAAAAATTTCAATGTCCCGATTGTCCCAAATGTTTTGAGAAAAAAGCTTTTTTATCGACTCACTATAAGGTGCACACGAAGAAGACCGAAAATAAATCGAATAAAGACACAAATAGTGTAGATGACGTTGGTGAAGAGGATGTGGAAAAGCTCAAGAGcttgaaaaatgtaaatgaaactGAGTTGGATATGGAGAAAGAATCTAAAGTTATTGTTAAAGAGGAAATAGAAGTGATCGAAGATAGCATGGATGAGTTAGATGCTAATGCGGAATGTTTCAACAATGATTATGATGATTCAGAtGATAATTCCGAAAAAAATGCGTTAACAATACCTGGTGCTAAACATATCAAAAATATGGATTTCATTGACACGGTCATGGGAGAAATTGAAAAaCCCATTAAAGTAAGTGGTAATTTTCCTTGCGCAGTTTGTGGTAAAGTTTTTGATCGTCCTTATAGTCTTAAACGTCACAGTTCAGTACATTCTATTTCAAAACCGCAtgaatgtaaaatttgtaaatatcgtTTCGATAGAGTTAATAGCTTAAAAGCTCATATGGGTCAACATGACGGTGACGGCACTGGCATTTTGATGCCACAGTGCCGTCCAGAAGGTTTTAAATGTCCTTATTGTCCAAGACGTTTTGAAAAACAAGCTTCGCTGTCAGCTCATCGCCAAATACACACCCGTAATGCGGCAGGAGCTAACTATCCATGTATGGTTTGCAAACGTAACTTTATGTCGGTGACATCTTTAACCGAACACATTACCAATAAACATCCGGAAGTAGAAAAACACAAATGTGACCAGTGCGATAAAACATTTGTAATACATGCTCATCTGGTGGAACATTTAAATAGACATAGAGGCAATGAAAATCTATTATGCCTAATATGTGAAAAAGAATTTGGCTATACGAAATCTTTGAAAGAGCACATGCGTACGCATAGTGGACAAAGTGCTCATTTATGTCTAGAGTGCGGTAAAACCTTTCGAAGAGCAAACAAATTTCGTCAACATATGGAACGTCATAAAGGTTTAAAGAAATATCAGTGCCCAGAATGCCCCAGCCGTTTCAAATGTCGTCCAGATATGATTAAACATACATCAACACATACTAATGCCAAACCACATATGTGCGATATATGTGGTTCACGTTTCACGCAGTCCTCTTCTCTGAAAAAACACAAGTTTTTACATACTGGAGAACGGCCATTCAAATGTGACCAATGTAGTATGACATTCGCAGTTATCGATCATTTGCGACGTCATATGCGTACCCATACCGGAGAGAAACCATATAAATGCAAATATTGTGGACGTGCCTTTGCCGGAAGTCCATATTTAACGAAACATTTAAAGACTCATGTAGGCGAAAATACCTATATGTGCGATCAATGTCCAATGGCTTTCAAATATCAAGCGGAATTGAAGCAACATCAGTCAGAACATTATAAAATGGCTCAAAAACTCGTTCAACATCATCAGGAACTACCATTGCCTATACATAATCATAACCAACAAATTATAATATCAGATCAAAATCATCTTTTAACGATAGCAATTCCCAATCATCATCTAATGACTCTGGTGGATCACCATAGTCAGCAACTGTCAACAATTGTTGAACAAACAGATGTTAATGAAGCTGCCAGACAAGACAATATAGATATTAAGAATCTCTCATCATAA
- Protein Sequence
- MSCDLMTKCRTCLCDSHIFHKLYGYVDENYQILEMLDGIVPQIDIKASSNYSSLVCQSCVGKLVVGYKFQQLCIETNKRLHDLMDFSIFDTAPKLEKTFDPLTGEPSFKMKIEVEDSACFECEINPEQLEAPSNNDNDWGPGHNTDNGTDSSVDAEASFKIIIEVEDDASFECEINPEELEKPADNDNDWGPDHNTDNDTDSSNEKLPVLKESKDHKYSKSDEGERLSKNNRRKGQFRCGECNKVFFAEKTFKAHILTHENEDITQSNIEVKNESKDEINIDIYEQNYCKENDIAIQKFQCPDCPKCFEKKAFLSTHYKVHTKKTENKSNKDTNSVDDVGEEDVEKLKSLKNVNETELDMEKESKVIVKEEIEVIEDSMDELDANAECFNNDYDDSDDNSEKNALTIPGAKHIKNMDFIDTVMGEIEKPIKVSGNFPCAVCGKVFDRPYSLKRHSSVHSISKPHECKICKYRFDRVNSLKAHMGQHDGDGTGILMPQCRPEGFKCPYCPRRFEKQASLSAHRQIHTRNAAGANYPCMVCKRNFMSVTSLTEHITNKHPEVEKHKCDQCDKTFVIHAHLVEHLNRHRGNENLLCLICEKEFGYTKSLKEHMRTHSGQSAHLCLECGKTFRRANKFRQHMERHKGLKKYQCPECPSRFKCRPDMIKHTSTHTNAKPHMCDICGSRFTQSSSLKKHKFLHTGERPFKCDQCSMTFAVIDHLRRHMRTHTGEKPYKCKYCGRAFAGSPYLTKHLKTHVGENTYMCDQCPMAFKYQAELKQHQSEHYKMAQKLVQHHQELPLPIHNHNQQIIISDQNHLLTIAIPNHHLMTLVDHHSQQLSTIVEQTDVNEAARQDNIDIKNLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -