Cimp093836.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:236089903-236096647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0034 1 12.6 0.5 1 23 127 150 127 150 0.97 2 13 0.0063 1.9 11.8 1.7 2 23 156 178 155 178 0.97 3 13 1.5e-07 4.5e-05 26.4 2.6 1 23 187 210 187 210 0.97 4 13 6e-06 0.0018 21.3 4.8 2 23 475 496 475 496 0.98 5 13 1.8e-06 0.00056 22.9 3.2 1 23 502 525 502 525 0.96 6 13 0.00029 0.089 16.0 1.9 1 23 530 553 530 553 0.98 7 13 8.4e-05 0.026 17.7 1.3 1 23 564 586 564 586 0.95 8 13 0.0023 0.69 13.2 2.2 1 23 591 614 591 614 0.97 9 13 3.4e-05 0.011 18.9 0.8 1 23 620 642 620 642 0.96 10 13 0.00016 0.048 16.8 1.9 1 23 648 670 648 670 0.98 11 13 8e-07 0.00024 24.0 1.6 3 23 678 698 677 698 0.99 12 13 5.6e-07 0.00017 24.5 0.3 1 23 704 726 704 726 0.99 13 13 0.0029 0.89 12.8 0.2 1 23 731 754 731 754 0.98
Sequence Information
- Coding Sequence
- atggaaGTGAATTCTCGGCTGGTCAGTTACAATAAAGCCGCAATTTGTCGGATATGTATGCAGGACAGTTTAAATTTATTTCCCATATTTAATGAAGTATACATGGGCGACGGCACTGTCACTATAGCCGACATTATTACTGAATGTACAAAATATGCGGTGGCTTATAATGATAAACTACCAACGCTAATATGTAATTCGTGCATGGAAGCAGCTCGCAATGCCCATCAATTTAAGAAGAAGACCGAAGAGTCTTACTGCCGCTTAAAGGCGTTGTATGATATAACATGGGTTCCCAAACGGGAGAAGGGTAGCAATGTAGTGAGGGTGAGTGCCCTCACTACAGATAAGTATACACAAACTGAAAAAAGCACTGTGTTTCAGTGTGAGTCTTGCCCCAAAAAGTTTTTTGCCGAAAACGAATTAAGGCAACACCGTGCAACCATCCATATAAATGATGGCAAGAAATGTCGTGTCTGTGGTGACAAATTTAATCATTTGGGTCAGTTGAAGGTCCATTTATCAACTGAGCATCCCAACGAAGGTATTCGCTGTGAATTTAAGTGTAACGTCTGTGGCAGGGAATTTACACGCAAGGATCATTTGAAAAGACATTTGATACGGGTGCATAAATTGGAAGATTCCAAGTTAAATATTTCGAAAGTATCTCTTGATGAGCCTGAAATTGAAAACCCAACTCCAATATCGACTAGTCTCAATAACTACAGCAGTCATTGGCCCGACTATCAAGACGATGATGACAACGAGCCAATAGCAATAGAGGGCCAGGAAAACGAAACTATTATAGCTACGAATCCCTTCTCCAGTGAAGATGAAGACATGGATCATCATAATTTCAATGATATGGATGAAGAAGACGTAAAGCAATTTGTGGAAACTATAGCACATCCAGAAATATCCATTAAAGTTGAAAATCCCGACTTCAGTTATAATATTACATCAGAAAAGAAAGAGAAATCACCAACCAAAACCAATGATACTTTAGGTGAAGACGTAAAAACTGAAGTACAATATACACTTAAGCCTGAAAAATCCGAAGTTAATAATGACGACGACCGAAATGATAAAGATacagataaagataaagataataaTGACGATGATGACGAACATAATTATGATACATTTGATGAGAATCATAGTAATAATCAAACAAGTGATGATGATGAAACGGACGATGATTATGATCATGAAGCTGATGCCGATGCTGACGCTAACGCTGACGGTGACGGTAATGACAATCACAAACCCACTAAGAAAAGTACCACCAATAAAACTTCACCAGTGACATCTATCAAACAAGAAAATCCCTCATGTTCCTCTACTACTACGAAGAAAGCAAAATCTGTAAAACTAAAAACACCCAGACGACGTCATGGTTCATCCAAAAATGAAGATAATCGTTGTAAAGAATGTAATCGTTCGTTTACGCGTTACAATCATCTTCTGCGCCATATGTTAACCCACAGTGATGAAAAGCCACATGTTTGCAATTTTTGCGGTAAAGGTTTTTCACGTTCCGATCATttacaaaaacatgtacaaagtATACATTGTgaaaagaatttcaaatgtgATCTATGTTCCAGTGCATATGGTCGTAAAGATCATCTGCAGCGTCACATCGAAACGCGCCACAATAAAGATCCTACGGCCCAAAAGCCTCAATTCGATTGTGATATGTGTGAGAAAAAATTTACAACCAAAGCCTATTTGGTAAAACATAAACTATTGCATACGGATCGTTTATATGCTTGCAAACATTGTTCGGAAACTTTTACTGAAAAGGAACCAATGAAAGAACATCAAAAGAAAGAACATGCTCAACCGCGCAATTTTCTGTGCAACATTTGTGGTGATTCATTTCAACGGAATGAATATCTTAAGATACACATGCGTCGTCATACCGGTGAAAAACCCTATAAATGTCGTTTTTGTGAAAAAGGTTTTCCTAGAAGTACAGATCTAAAAATGCATGAGagATACCACATTGGCCATAAACCAAATCTGTGTAATTTATGTGGTAAAGGATTCCATCGACCCTATAATCTTACTATACATATGCGTACTCATACGGGTGAGAAGCCCTACAAGTGCAATCAATGTCCTCAAGCATTTGCTCAAAGTAACGATTTGAAAGCCCATATTAGACGTCATACCGGAGAAAGATTTCGTTGTGATTTGTGTAGTGCAGCTTTTTTACAGCGTTACGGCTTAAATGCCCATCTGAGGACAGTTCATGGCATAATAGTTACCTCATTTACCGGACGTTTACGTAAAACAGATCAACCTATAGATGGCAGCGATCTTCTCGATCAACAACCACCACCAGCACCACCGCCATCACAATTATGCTCGGTTGCTGCTAGTGCTAGCAGGGATCAATCTCAATCATCACTGCCTTCCCCACACCTTGATAATAATGCCACACCTCCGCCCTTGTATTTAGGTCATCATTTTATAAATCAAATGCCTGTTATTGCTGAATCCCAACCAACATCTCCAACTGACATCTCGCCATCACTATCGCTATCACATCCTCCAACACAGCAAATGTAA
- Protein Sequence
- MEVNSRLVSYNKAAICRICMQDSLNLFPIFNEVYMGDGTVTIADIITECTKYAVAYNDKLPTLICNSCMEAARNAHQFKKKTEESYCRLKALYDITWVPKREKGSNVVRVSALTTDKYTQTEKSTVFQCESCPKKFFAENELRQHRATIHINDGKKCRVCGDKFNHLGQLKVHLSTEHPNEGIRCEFKCNVCGREFTRKDHLKRHLIRVHKLEDSKLNISKVSLDEPEIENPTPISTSLNNYSSHWPDYQDDDDNEPIAIEGQENETIIATNPFSSEDEDMDHHNFNDMDEEDVKQFVETIAHPEISIKVENPDFSYNITSEKKEKSPTKTNDTLGEDVKTEVQYTLKPEKSEVNNDDDRNDKDTDKDKDNNDDDDEHNYDTFDENHSNNQTSDDDETDDDYDHEADADADANADGDGNDNHKPTKKSTTNKTSPVTSIKQENPSCSSTTTKKAKSVKLKTPRRRHGSSKNEDNRCKECNRSFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHVQSIHCEKNFKCDLCSSAYGRKDHLQRHIETRHNKDPTAQKPQFDCDMCEKKFTTKAYLVKHKLLHTDRLYACKHCSETFTEKEPMKEHQKKEHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIDGSDLLDQQPPPAPPPSQLCSVAASASRDQSQSSLPSPHLDNNATPPPLYLGHHFINQMPVIAESQPTSPTDISPSLSLSHPPTQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -