Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821519.1:52368456-52402648[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.9e-08 0.00012 24.4 0.0 1 39 45 83 45 88 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.9e-08	0.00012	24.4	0.0	1	39	45	83	45	88	0.93

Sequence Information

Coding Sequence: atgcgtcgttctttcgtCGATTTAGCTCAAGAGCAGTTGGAAACCGACGCGATGTTATATCACAAATTTGTATTCAGCGAAGAgCTTTATACAATGGTACGTACATATAAAAAGAAGAAGAATACTACATTCAGTGAAGATGATATGAAGAGTGCTATCACGGcagttttaaacaaaacaatgacCCTTAGAGGTGCTGCCAATACTTACGGTATTCTACCGAATACCTTATTTTATAGAATTAAgggatttaaacaaaataaaacaatgaaaGGTGTAGATTATTCAAGCAATTTCTCCACAAGACAAGTTTTCACCACCGCTGAAGAAGATATGCTTGAAAATTATTTACTCAAAAGCTCGGGAATGAATTATGGTTTAACATACTTCCAAGGCCGGATGTTAGCATTTCAATACGCCACACTCCTAAAAAAATGCCCCCAGCAGTGGACTGAAAATAGACAAGCTGGGATGGATTGGATTAAGGGCTTCATGAAAAGACACACTAACCTTTCACTTCGCAAGCCTGAAAACACGAGCTTGTCACGATCAACAAGCTTTAATAAGCACAACGTCGAAGAATTCCAATCCAATTACCAGAGAGCACTTAGTAAGTTTAACTTTACTCCCGACCGCATATTAAACTTAGATGAAACAGGCCTGACTACAGTGGTGCAAGCTCCAAACGTAATAGCAAAAAAGGGTCAAAAACAAGTTGGACAGTGTGTTTCTGCTGAGAGAGGACAGCTTATAACTATGTGCGCTATTGTAAATGCAGCTGGCAACACAATTCCTCCTGTATTTATCTTTCCACGAGCTAGATACCACGATAATATGCTTGCTGGAGCTCCAATTGGTAGTGTCGGTTATGCTAACAGTCCCACAAGTGGTTGGATGACGGGTTTGCTTTTCATAAAAGTTCTTGAACATATCCAAAGACATACAAGATGCTCAAAGAATGACATGATCTTACTTTTGATGGACAATCATGAAAGCCATTGTACAATAGAAGCTATAAGTTTTTGCCGAGAACATGGTATCGTTCTTGTAACATTTCCTCCTCACTGTACCCATCGTCTTCAGCCTCTCGATGTCGCAGTTTTGGGACCATTCAAGCAGAAGTTTTCCGTTGCGCAAAATGATTGGCTAATGAATCATCCGGGAAAAACTATTACAATACATGATCTTGCTGGTATTGCCAATACTGCTTTTACTGCTGCATTTACGCCGAGAAATATTGTTTCTGGTTTTGCAAAGCCAGGAATTTATCCGTTTGCAAGAACTGCATTTTCGGACGAAGATTTTGAATGTGCAGAAGTCACAAACAGACCAATGCCAGAGTATTCTACAGCTCAAGTTGAGCCAAATATTGATTTATCAACCGAAGTACCAAATATTGTTGATTCTCTCTTATTTTCTGGAAATGACGAATCCAATGCTGGGCATGATTCTTTAAAGGAAAATGTAATGTCACCTGAAATCGCAAGGCCTTTTCCGAAAGCTGCTCCAAGACAACACACTAATCGAGGAAGAAAGAGGGGTAAATCAAGAATTTTAACAGAAACACCAGAAAAAAATGAATCAGAGGATTTCTACATCGAACGTCCAAGGCATGTTAAGAAACCAGTCATAAGCTCTTTAAATAAACGgctcaatataaataaaaatgcaaaacgtccaataaaaactaaaaagtctAAGGATTCTAGCTCGGACTCTATTGAAAGCTCGTTTTCGGTGAATGATGATACAGATCTCGATTTCAACTTTGCTGATGATTCATCTGAAGACCAAATTGCTGTAGAGTGCCATGAAGAAGAATACATCGATTTGAGCTACGACCAATTAAATCCAGGAGACTATATATTAGTGGAATGCtccaataaaaacaatgtaaaaacgtTCGGATTTGTTGGCAAAATAACTGAGAAAGATGACAACAACTATAAcgtcagctttttaaaaaagaaaccagGTTCCTTCAAGTTTTTTTATCCTGATATAGCAGACAAGTGGTCTATAAATGGCATACAAATAAAGGCTAAGCTTCCAACACCAGTAAACCAACCTGGAACATCGAGGACAGCTGCGATGATGACTTTTGACTTTGATTTCTCTAAATTTAAAATGGGTtaa
Protein Sequence: MRRSFVDLAQEQLETDAMLYHKFVFSEELYTMVRTYKKKKNTTFSEDDMKSAITAVLNKTMTLRGAANTYGILPNTLFYRIKGFKQNKTMKGVDYSSNFSTRQVFTTAEEDMLENYLLKSSGMNYGLTYFQGRMLAFQYATLLKKCPQQWTENRQAGMDWIKGFMKRHTNLSLRKPENTSLSRSTSFNKHNVEEFQSNYQRALSKFNFTPDRILNLDETGLTTVVQAPNVIAKKGQKQVGQCVSAERGQLITMCAIVNAAGNTIPPVFIFPRARYHDNMLAGAPIGSVGYANSPTSGWMTGLLFIKVLEHIQRHTRCSKNDMILLLMDNHESHCTIEAISFCREHGIVLVTFPPHCTHRLQPLDVAVLGPFKQKFSVAQNDWLMNHPGKTITIHDLAGIANTAFTAAFTPRNIVSGFAKPGIYPFARTAFSDEDFECAEVTNRPMPEYSTAQVEPNIDLSTEVPNIVDSLLFSGNDESNAGHDSLKENVMSPEIARPFPKAAPRQHTNRGRKRGKSRILTETPEKNESEDFYIERPRHVKKPVISSLNKRLNINKNAKRPIKTKKSKDSSSDSIESSFSVNDDTDLDFNFADDSSEDQIAVECHEEEYIDLSYDQLNPGDYILVECSNKNNVKTFGFVGKITEKDDNNYNVSFLKKKPGSFKFFYPDIADKWSINGIQIKAKLPTPVNQPGTSRTAAMMTFDFDFSKFKMG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370932; iTF_00370933; iTF_00370934; iTF_00370935; iTF_00370936; iTF_00741798; iTF_01373994; iTF_01373995; iTF_01373996; iTF_01373997; iTF_01373998; iTF_01373999; iTF_01201535; iTF_01201534;
90% Identity: iTF_00370932; iTF_00370933; iTF_00370934; iTF_00370935; iTF_00370936; iTF_00741798; iTF_01373994; iTF_01373995; iTF_01373996; iTF_01373997; iTF_01373998; iTF_01373999; iTF_01201535; iTF_01201534;
80% Identity: iTF_00370933;