Cimp106819.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- lola
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:160590568-160593061[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-11 8.1e-08 34.6 0.0 4 45 425 466 422 466 0.91
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGCCGCTTCATGCTCGAATGGCCCCGTTGAAGGTCAAACATATTGCCTAAGATGGAAtaatcataaatcaaatttggtaGAGATATTGGATGCTCTCATCAAAGTAGAAAGTTATGTAGATTGTACCATTGTCGTAGATGACTCGGTACAATTTAAGGCCCATCGCGTGGTTTTGGCAGCCAATTCGCCATACTTTCAGTCCATTTTACAAGACTTGCCCATGGATCATTGCAGTATTATATTTCCGGGTGTCAAGGCTTTTGAAATGCGTGCTTTATTGGAATATATGTATACAGGTGAAGTGAATGTTACCCAAAGTCAAATACCTAAAATAATGCGCATTGCCGAGGAGCTGGAGGTTAAAGGTCTATTTGATATGGCTGatttaaaggaaaaatttcataaattaagtGAGGAACACGCTGAAAGAACGGCCAGTAATCCTTATGCCAGCACCTCAGCACCCGCCAATCCATATTTTTCAGTTACCACTACCTCGTCACCGCTGGTGACAACAGCAACCGAAAATTTAACAGCCCCTCTGATTTGTTCTAAAGAATCCGATAACTATCGGAATAATTCCTCCTCAGTGATCTCTACTTCATCGAATATTTCACCCTCAGCGGCACCTTCCAGTAGTTCATCACCGCCCTATACTAATTACAAATCGCCCTATTCCAGTTTATATACGAAGTCGCCGGGACCCAATCCGATTCAGACAACATCTAGTAATCCTCAGCCCACACAACAAACACCAACATATCACAGTGCGACAAATGAACGTTCTCCTGCTCAATGGCCTTTATCACCCTCAGCTGCTGCCGCTGCTGCTATGTTAAGTTCCGTGTATGAATCTGCTCCCGATATGAATCCTTTGAAACGTAAAAAACTCTCCTCCATGTCCAGTATGCTTATGAATCGTGACACACCGATTTTGCGTAATGTTTTGGCTCAATCAAACCCCGCCGATTCATCACAGCAATTACCCCTGTTATTGCCCAATGCCACTAAGCCAGAAAAATCTGCGTCGTCTTCGAGCAATGTCGAAAAAACAATTGGTGCTCTTAACAACAATCATAGTTTTAATGGTTCCGATTATAGTAGTGATAAGaaATACCCAGACGAGCCTCACTCGCCCTTCACAGATCGTTCCTTTGAAGATGATGGTTTCGATCCTAAAGGTAACTTTAGCGGTAATTTCGGCAATAATGCTAATCAAAAACCCGAATGGAAACGTTACAAGCAATATACCCGCAGTGACATCATGTCTGCCATACAATGTGTACGTGAAGGCATGAGTGCTTTGCAAGCCTCACGCAAATTTGGTGTTCCCTCTCGCACTCTCTATGATAAAGTCAAGAAGTTAGGCATTACTACTGGTCGTCCCATGAATCGTACGATGAAACGTAGCCCTAGCAGTGTAGAATCCTCTGCCGCATTTCCTTATGCTCATGGTTATGGACAAGCCTCTGCAGCAGCAGTAGCCATGCATGAAGCTGCTGTTCGGGAGGAACGTGAATTGAAGGAACATCATAGAACAACTGAACATCATCATTTACCACCCACCATACCTCATCCAGCGGCCGCATTATTAGATCATGCTTTCTTGCAGCAGGCTTTGGAAAATCGTGGTGGTGGCGATATAGCCGGCCGAGAAGCATTACATGCAATGGCCTTAGCTGCTGCTGCGCACGCTGCTGCCAATCGTATGTCTACAAGCCCAGGACCTAATGGTAATGCAGTGCGTTCACCTAGTCCTACCAATTTCGCCCTAAAGTATGGTAATTTACGTAATGCCGAACAAGAGTTAATGGAACGGCATGAATTGGAACGTGAACGTGAGAGAGAGCATGAATACGTTGAAAGAGAGAGGGAGCAGCGGcaacatgaacatgaacatgaaTTGGAACGTGATCATGACGATGAAGATGATCATGTTGAAGATTTATCAGTAGCCCGCAAAGAAAGTAACAATTCACCTATGGAAAATAAAGACGGAACTGAATCTCCTTACTCGCCCGGCGTTCCAAATAATGATCATGAAAAATCAGTTATAATGACCACAAAACTACCCTCCACTGCAATTGATGAGGCGTTCATACATGAAGCCAATATGAAACGTGAGGTGGTCATAGATGACGTTCGAGCGGACTGA
- Protein Sequence
- MGGPPAASCSNGPVEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDSVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFHKLSEEHAERTASNPYASTSAPANPYFSVTTTSSPLVTTATENLTAPLICSKESDNYRNNSSSVISTSSNISPSAAPSSSSSPPYTNYKSPYSSLYTKSPGPNPIQTTSSNPQPTQQTPTYHSATNERSPAQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQSNPADSSQQLPLLLPNATKPEKSASSSSNVEKTIGALNNNHSFNGSDYSSDKKYPDEPHSPFTDRSFEDDGFDPKGNFSGNFGNNANQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQASAAAVAMHEAAVREERELKEHHRTTEHHHLPPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPTNFALKYGNLRNAEQELMERHELEREREREHEYVEREREQRQHEHEHELERDHDDEDDHVEDLSVARKESNNSPMENKDGTESPYSPGVPNNDHEKSVIMTTKLPSTAIDEAFIHEANMKREVVIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_00371179;
- 80% Identity
- iTF_00371179;