Cimp106821.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- lola
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:160605250-160606897[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-11 6.1e-08 35.0 0.0 6 45 424 463 419 463 0.91
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGCCGCTTCATGCTCGAATGGCCCCGTTGAAGGTCAAACATATTGCCTAAGATGGAAtaatcataaatcaaatttggtaGAGATATTGGATGCTCTCATCAAAGTAGAAAGTTATGTAGATTGTACCATTGTCGTAGATGACTCGGTGCAATTTAAGGCCCATCGCGTGGTTTTGGCAGCCAATTCGCCATACTTTCAGTCCATTTTACAAGACTTGCCCATGGATCATTGCAGTATTATATTTCCGGGTGTCAAGGCTTTTGAAATGCGTGCTTTATTGGAATATATGTATACAGGTGAAGTGAATGTTACCCAAAGTCAAATGCCTAAAATAATGCGCATTGCCGAGGAGCTGGAGGTTAAAGGTCTATTTGATATGGctgatttaaatgaaaaatttcataaattaagtGAAGAACACGCTGAAAGAACGGCCAGTAATCCTTATGCCAGCACCTCAGCACCCGCCAATCCATATTTTTCAGTTACCATTACCTCGTTACCGCTGGTGACAACAGCAACCGAAAATTTAACAGCCCCTCAGATTTGTTCTAAAGAATCCGATAACTATCGGAATAATTCCTCCTCAGTGATCTCTACTTCATCGAATATTTCACCCTCAGCGGCACCTTCCAGTAGTTCATCACCGCCCTATACTAATTACAAATCGGCCTATTCCAGTTTATATACGAAGTCGCCGGGACCCAATTCGATTCAGACAACATCTAGTAATCCTCAGCCCACACAACAAACTCCAACATATCACAGTGCGACAAATGAACGTTCTCCTGCTTTATCACCCTCAGCTGCTGCCGCTGCTGCTATGTTAAGTTCCGTGCATGAATCTGCTCCCAATATGAAACCTTTGAAACGTAAAAAACTCTCCTCCATGTCCAGTATGCTTATGAATCGTGACACACCGATTTTGCATAATGTTTTGGCTCAATCAAACCCCGCCGATTCATCACAGCAATTACCCCTGTTATTGCCCAATGCCACTAAGCCAGAAAAATCTGCGTCATCTTCGAGCAATGTCGAAAAAACAATTGGTGCTCTTAACAACAATCATAGTTTTAATGGTTCCGATAATAGTAGTGATAAGaaATACCCAGACGAGCCTCACTCGCCCTTCACAGATCGTTCCTTTGAATATGATAGTTTCGATCCTAAAGGTAACTTTAGCGGTAATTTCGGCAATAATGCTAATCAAAAAACCGAATGGAAACGTTACAAGCAATATACCCAGAGTGACATCATGTCTGCCATACAATGTGTACGTGAAGGCATGAGTGCTTTGCAAGCCTCACGCAAATTTGGTGTTCCCTCTCGCACTCTCTATGATAAAGTCAAGAAGTTAGGCATTACTACTGGTCGATGA
- Protein Sequence
- MGGPPAASCSNGPVEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDSVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQMPKIMRIAEELEVKGLFDMADLNEKFHKLSEEHAERTASNPYASTSAPANPYFSVTITSLPLVTTATENLTAPQICSKESDNYRNNSSSVISTSSNISPSAAPSSSSSPPYTNYKSAYSSLYTKSPGPNSIQTTSSNPQPTQQTPTYHSATNERSPALSPSAAAAAAMLSSVHESAPNMKPLKRKKLSSMSSMLMNRDTPILHNVLAQSNPADSSQQLPLLLPNATKPEKSASSSSNVEKTIGALNNNHSFNGSDNSSDKKYPDEPHSPFTDRSFEYDSFDPKGNFSGNFGNNANQKTEWKRYKQYTQSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00371177;
- 90% Identity
- iTF_00371177;
- 80% Identity
- iTF_00371177;