Cimp030260.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cordilura impudica
Gene Symbol
pha-2
Assembly
GCA_963682025.1
Location
OY821517.1:345554725-345568914[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.5e-12 2e-08 36.5 0.1 4 42 16 54 13 56 0.90

Sequence Information

Coding Sequence
ATGTCAGTAATGCAAAAACGACAAATTCATCAATATGAAAATAAGTCAATGGAAATGGCCTTGGAGGAAATAAGATGTTCGAAGTTAAGTACAAGAAAAGCTTCACGAAAATATAATGTTGCCAGAGCTACACTACAAAATAGATTAAAAGGCCATACTCAAAACGAAGGTGATAATGTACACAGCGTAATTGAGGAACAGGTAAAAAGGCATATAGTCAGCAGACCAATATATACACCAGGTGAATATACGGCTCTAATAGCAACAGCTAAAAAGACTGGAATGCCATATAAAGTTCACGAATTGTCTCATGAAGATTTTTATGATCTAAAGGCCTTACAGGAACTGTGGGGCAAAAATTTTCTTGTAAATGAGAACTGCCAAAAAATAAATTGGCATActTTTCCCAACAATGCCGCCGCTGCTCTATATTGTAATACCGTATATCCCAGCTTCTATATGCCCGGTTTTGGTGTAAAACGTAAAGGTGGACAAATACGTTTTACTTCTCAACAAACTAAAAATCTCGAAAGCCGTTTTTCCTCCTCCAAATATCTATCGCCAGAAGAAAGAAGACATCTTGCTCTACAACTCAAACTGACGGATCGTCAAGTGAAGACATGGTTTCAAAATCGTCGTGCCAAGTGGCGACGAGCCAATCAAGCTAAACGTTCACATTACGCTCATCAGGCGTCTTCgcagcaaataaaaaataatatgagcgCTACCGTGGGGAATGTTAGTAAAGCAAATCACATGATCACATCTAGCAGTCAACAAATGACAAATGATGATAAGCAATTTTTATCGGAAAACGATGAGAGTGATGGTGATAGCGAGATTGAAGATATTTATGTAGAACATAGACCGAGATCGGAATGA
Protein Sequence
MSVMQKRQIHQYENKSMEMALEEIRCSKLSTRKASRKYNVARATLQNRLKGHTQNEGDNVHSVIEEQVKRHIVSRPIYTPGEYTALIATAKKTGMPYKVHELSHEDFYDLKALQELWGKNFLVNENCQKINWHTFPNNAAAALYCNTVYPSFYMPGFGVKRKGGQIRFTSQQTKNLESRFSSSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANQAKRSHYAHQASSQQIKNNMSATVGNVSKANHMITSSSQQMTNDDKQFLSENDESDGDSEIEDIYVEHRPRSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00370834;
90% Identity
iTF_00370834;
80% Identity
iTF_00370834;