Cimp060529.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821519.1:51340618-51342576[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-08 0.00017 24.0 0.0 10 39 404 433 395 437 0.83 2 4 1e-13 2.2e-10 42.8 0.0 5 44 453 492 451 493 0.93 3 4 0.071 1.5e+02 4.9 0.0 27 38 522 533 518 539 0.88 4 4 2.8e-15 5.8e-12 47.9 0.0 4 41 561 598 561 600 0.92
Sequence Information
- Coding Sequence
- atgaatcatTTAAAGTGGATGGGCCATTCGGCCACCATATtagatatacataaaaatttgcgAGATGATTTAAAAAGTTGTGAAGTTTCTCTGGTGGCTAAAGGACACTGCGTGAAGGCACATCGTTTTGTTTTGTCATCATGTAGCGATTTACTACGTGGCCTTCTGAGCGATATACCCATTGGCCAGGAGTGTTGTGTAATGGTTCCCGATATTAAGGGTCATCTTTTGGATAATGTATTGGCGTTTATATATTTGGGTGAATGTTTCCTGTCCTCATCAAATTTATCCGAATTTTTGGAAGCCATTAATATACTGGGCATAAAAAGTGCCATCAGTTTTGAATGTAATACAAATTCTTTACAGGCTGCTCAAAATAGTAATAATGTTGGGATGGGTGGTAGTATGTCAAATGTCAGTGCAGCTAGTAGCACAATGTCTGCCAGACATGTAGCTAGTGTAGTATCGAGTCCAGTAGCGGAAGTTTCGTTGCAGCAAGAAGAGTTAATggaaacacaaaatattttacattccGAAGCTCAGACATCCAACTCAAACACTGCTAATACATCAGAAGGAACTCGAGAGTTGGACTTTTTAGATGTTTATCATGAGCCACAACATAAAATTACCTACTCCATTGAACACGTGCCAGGCTCTACAGCTGGCAATGAATTTATTTTAACTGAAAACTCTGGCACTTTCACTCTAACCCATAACACTAAATTGGAAACGTCATCCGGTGCTGAATCGACAACTATGGAAGTCACAGAAGAGGATGGAAGTGAGTCACATATAATTGAAGAATATAGCAGTGGAGATGAACCACTTATACATATGGGTGAATCAGGATCAGAACAAACTGTTGCCGTAGCCCAAGCGCCATCTCAAACACCAGCAGTAACACATACCGTTAACACTGCCATTGCATCGACTTCAACTACGTCAATTATACAAATGAAACCAAAGATAAAAACAGTCAGGCTAAAGGCTGCGACAACTTCTCAAGTTTTACCTAAAATCGAGCATTCAGCCAATACATCGGTGGACAGTTCTACTGCCACGGATGATCCTATTTCTATACTTCAAAACTCGAATGAAAATTTTACATTACTCAAAGACGAAGCAATGGTATCGAGTAACAGCTATCATGaaactaatgacttttcaatGAATACATCCAATATGTCAGCAGCAGATTTAGCGTATCAAGCAATGATTAGTGAAGGCATGTCCTTGCCAAAGGCGGCCGTAAAATTTAATGTATCCAAAACTGAATTATGGCGTCGGGTACGCAGTACAGGTGTGGAAAATCTACATAAACCTCCCAAATTAGATCCCGGGAAAATAGATGTTATTGAATTAGCCTCTCAAGCTGTAATCAATGAGGGACTGTCCTTACAAAAAGCAGCCATACGTTATGATATTTCTAAAACAGTACTCTGGCGTAGAGTTCGTAAACATCCTCAATATATGAAAACAGCACGAGAAAATCCCGTAATATCTAAGGCTTATGACCGTTTGAAAGCTGGTGAATCTCTTAAGAGTATATCACAAGATTTAGATATACCCATGTCCACATTGCATCGTCATAAGGTGCGCTTATCACAGACGGGTCAATTACCCGAATTTGTGACATGCAAAAAACGAGACAGCATGTCAAAAGATGACTTAAAATTGAAACTTGCAAAGGCAGTCCATGCCTGTGTACATGAAGGCATGTCACAAAATCATGCTGCCAATTTATTTGAGATTTCCAAAAGTACTCTATGGCGTCATCTTCAAAAACGTGTAGCCGAAGCAGAAGCGGACGATCAGTCAGAATCTATGGGAGAGGAGGATGACATTAAGCAGGAAGTAATTTTATCCTAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRDDLKSCEVSLVAKGHCVKAHRFVLSSCSDLLRGLLSDIPIGQECCVMVPDIKGHLLDNVLAFIYLGECFLSSSNLSEFLEAINILGIKSAISFECNTNSLQAAQNSNNVGMGGSMSNVSAASSTMSARHVASVVSSPVAEVSLQQEELMETQNILHSEAQTSNSNTANTSEGTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHNTKLETSSGAESTTMEVTEEDGSESHIIEEYSSGDEPLIHMGESGSEQTVAVAQAPSQTPAVTHTVNTAIASTSTTSIIQMKPKIKTVRLKAATTSQVLPKIEHSANTSVDSSTATDDPISILQNSNENFTLLKDEAMVSSNSYHETNDFSMNTSNMSAADLAYQAMISEGMSLPKAAVKFNVSKTELWRRVRSTGVENLHKPPKLDPGKIDVIELASQAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPVISKAYDRLKAGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPEFVTCKKRDSMSKDDLKLKLAKAVHACVHEGMSQNHAANLFEISKSTLWRHLQKRVAEAEADDQSESMGEEDDIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00371202;
- 90% Identity
- iTF_00371202;
- 80% Identity
- iTF_00371202;