Cfor001882.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- stc
- Assembly
- GCA_013340265.1
- Location
- BLKM01012983.1:287694-295736[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.67 4.2e+03 -2.6 0.5 1 4 303 306 303 307 0.88 2 11 0.16 9.9e+02 -0.6 0.1 8 14 319 325 318 325 0.78 3 11 0.89 5.6e+03 -3.0 1.0 15 19 447 451 446 451 0.82 4 11 0.0097 60 3.3 0.7 4 10 480 486 479 486 0.96 5 11 7.5e-07 0.0046 16.4 12.6 3 18 498 513 497 514 0.92 6 11 1.5e-07 0.00091 18.7 11.8 1 19 550 568 550 568 0.97 7 11 2 1.2e+04 -4.4 1.6 9 13 574 578 573 579 0.69 8 11 6.5e-08 0.0004 19.8 14.3 1 18 608 625 608 626 0.97 9 11 0.52 3.2e+03 -2.2 2.6 5 10 657 662 657 662 0.95 10 11 1.5e-05 0.096 12.2 14.9 4 19 675 690 668 690 0.87 11 11 0.89 5.5e+03 -3.0 2.0 5 10 719 724 719 724 0.93
Sequence Information
- Coding Sequence
- ATGGCGAATTGGGATGGTTCATGTTTTGGAGgtgacaaacaaaattataattattttccatCTGGATACGGAGTAAGTAGTGTGCAGTCTCTTTCTGGTGCATCTGTTGACTGGACATGCTACCCTTTTCCTGTAACGTTACCGCAGGCACCCATAGATGGGTTCCAGCAGTTGAATACACCTGCTTTCACAGATCATCCCTTTCAACCAGTCTTTAGTTCTCCAGTTCCGTCCAGCTATGTGGATCAAAACGTTCAGGGTACAGATACAGATGGGGGTTATTATGTTGAAAATCTGAACACCAACTTGCCAAATGAATTCCATTTAGAAATGGCTGCAACATCATCACTGACACCTACTGCAGGGGAATTTATTCCTAGATCAGCTTCAGTGCACATGGATTCTAAATTAGGGAGAAGTGCTGAAGAAGCAGATAAAAATTGTGGGAAGGCTTCAAAAGAATCTAGACCAGTGACCTCAAATCCTTACAGCAGCTCTGATCGAGGCAACCATTTGTTCAGCAGACATGGTGATAGTGATTCAAAATACTTCCATTCCAACCGAAATCCATCCTCTGGGCCTGTTCATGATGTATTTTACAGTAATCGGAGAGGAAATGGTCGAGCAGTATTACGAAGTACTGTCACAAATTCAAAATCATATAATATGGAAAAAGCAAAGAATCAAGATAGACAGAGGTTATTGGCTGAAGCAGCAGCATTTTTGACTCCATCAGGTAATCCTGATGTGGCACCCATTTCAGATCGTGACACTAATTTAAATGCAGATATGAGGCAACAGGATATAAATGTTACTTGTCGACCGAAAGGTAAAGGAGAATTTAGTACAGCATTCATGCAGCCAAACAAGCCTAATGGTGATGCATCAAATGTACGTTTTAAGAACTGTGGCTCACATCAGCAAGAAAACTTTAGTCAACCAAAGAGGAGAAATGATGTCTGTCACAATCAACCCAACCACGGTGGTTTTCATGAGAGAAATGTGATTGTGCCAGTAAGTGGCAATGGCAATCCACTGAACCACCAGTTCCAACTTGCTGACCATAGCAATGGATTTAGTTATCGTGGAATAGGAGCTCCACATCACACATCTCCTAAGAAGGAGGCAGATCAGTATCGAGGTTACAGTGATGATGATGTCAGCCAGAGAGATCGACTTACTGATCAGCTGACACGTGGAGTTCTTGAGTGTCTGGTATGCTGTGATAGAGTCCGACAACATGATTCTGTATGGAGTTGTACAAATTGTTACCATGTGCTGCATTTGAGATGTATTAAGAAGTGGGCTAAGTCTTCAAAGGCAGATTCGGGTTGGCGATGCCCTGCATGTCGAAATGTAACGTCAAAGATTCCATATGAGTACCGTTGTTTCTGTGGAAAAGTCCATGATCCCGAATGGAATCGAGTGGATGCAGCACACACATGTGGCCAGGTGTGCGGACGTTCTCGGGCTGATCGGCATCCAGACTGTACTCATCGCTGCACTTTGCTCTGTCATCCTGGTCCCTGTCCAGCCTGTGCAGCCCAGGTGAACAGGAGCTGTGGTTGTGGGAAAAAATTGCAAGTTGTTAAGTGTGGTTCAGATCAGCCTCTGCTTTGTGGTGCTGAATGTGGGAAAAAACTCAGCTGTGGTGTTCATTATTGTACCAATAAGTGCCACACCGGGAATTGTTCTGAATGTCAGGAGAAGGTGCTACAAGAATGTCACTGTGGGAAAGTGGTGCGTGAAGTTCCATGTACCCAAGAGTCCTCagcttccaaatattttccttgtgaTGGTgtatgtgaaaaaaaattgtcctgTGGGAACCACATTTGCAGTGTCAAGTGTCACCCAGGACCTTGCCCTGACTGTGAGCTTTCTCCGGACAAGGTGACACACTGCCCTTGTGGGAAGAAGTCTTTGACAGATGAACAGATGCGATCAAGCTGTTTAGATGCCATCCCTACATgtgaacagaaatgtaacaaaaaactACCTTGCGGACAGCCAAGTAATCCACATTTGTGTCAGATGGATTGTCACAGTGGACCATGCCCTCCATGCCCTCTGACTACAATGGTTAAATGTAGGTGTGGCAACATGGATCGTGAAATAGCCTGTCAAGATCTTACCACAAAGGCTGACGATGCTAGGTGTGAGAAGAAATGCACAAAGGTTTGA
- Protein Sequence
- MANWDGSCFGGDKQNYNYFPSGYGVSSVQSLSGASVDWTCYPFPVTLPQAPIDGFQQLNTPAFTDHPFQPVFSSPVPSSYVDQNVQGTDTDGGYYVENLNTNLPNEFHLEMAATSSLTPTAGEFIPRSASVHMDSKLGRSAEEADKNCGKASKESRPVTSNPYSSSDRGNHLFSRHGDSDSKYFHSNRNPSSGPVHDVFYSNRRGNGRAVLRSTVTNSKSYNMEKAKNQDRQRLLAEAAAFLTPSGNPDVAPISDRDTNLNADMRQQDINVTCRPKGKGEFSTAFMQPNKPNGDASNVRFKNCGSHQQENFSQPKRRNDVCHNQPNHGGFHERNVIVPVSGNGNPLNHQFQLADHSNGFSYRGIGAPHHTSPKKEADQYRGYSDDDVSQRDRLTDQLTRGVLECLVCCDRVRQHDSVWSCTNCYHVLHLRCIKKWAKSSKADSGWRCPACRNVTSKIPYEYRCFCGKVHDPEWNRVDAAHTCGQVCGRSRADRHPDCTHRCTLLCHPGPCPACAAQVNRSCGCGKKLQVVKCGSDQPLLCGAECGKKLSCGVHYCTNKCHTGNCSECQEKVLQECHCGKVVREVPCTQESSASKYFPCDGVCEKKLSCGNHICSVKCHPGPCPDCELSPDKVTHCPCGKKSLTDEQMRSSCLDAIPTCEQKCNKKLPCGQPSNPHLCQMDCHSGPCPPCPLTTMVKCRCGNMDREIACQDLTTKADDARCEKKCTKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -