Cfor010766.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000800.1:393369-445153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 3.1e+02 1.7 0.4 1 21 8 28 8 29 0.92 2 15 2.1 1e+02 3.2 0.4 6 22 373 389 370 392 0.85 3 15 0.32 15 5.8 0.1 2 22 594 614 593 617 0.88 4 15 0.015 0.73 9.9 2.5 1 23 631 654 631 654 0.94 5 15 5.5 2.7e+02 1.9 0.1 1 22 662 683 662 686 0.88 6 15 0.0013 0.061 13.3 2.1 2 23 707 729 706 729 0.95 7 15 0.028 1.4 9.1 0.0 1 21 734 754 734 755 0.96 8 15 0.0021 0.1 12.6 3.1 1 23 857 878 857 878 0.98 9 15 0.0031 0.15 12.1 2.4 1 23 884 907 884 907 0.97 10 15 0.038 1.9 8.6 0.5 1 23 913 935 913 935 0.97 11 15 0.0026 0.12 12.3 0.4 1 23 942 964 942 964 0.95 12 15 0.35 17 5.6 2.7 1 23 969 993 969 993 0.96 13 15 0.056 2.7 8.1 2.1 1 23 999 1021 999 1021 0.95 14 15 0.00056 0.027 14.4 3.6 1 23 1027 1049 1027 1049 0.98 15 15 0.01 0.49 10.5 2.7 1 21 1055 1075 1055 1084 0.94
Sequence Information
- Coding Sequence
- CCAGACATCGATGATGATACGCATATCTGCCTCAAGTGCAGGACAACCATTGCTGGTTTGGACAACTATGTGAAACACCGGAAATCCGGTTGCGCCACAAGTAGTTCCAGCAGTCGTCCTCTCAATCATCCTGACAAAGGAGAGATCGTATCCGTTTCAAAGAATGGTACCATTCGTCCAGCACACGTAGAAAATGACCCCAGTCTCAAGGCAGAtgatttcttttcttccttggAACTCCAGAGCAGCGCTAAGAAAACTACAGGAACTTCCCCGGGAAGTTCCATCAGGAACCCTTGTGGTGTGGTAACAAGAAGTAAGGCTTCCGCAGCGATTATGGCCAGTACTTCTTCACGTGACACCCCGTCCACAAGTCAACAGAAAAGTGACAGTGAACTTCTTGGGAATGTCTCCTCAGAACTTTATTCACCATCAGCTGACACGGATAATGCCACAAGCACATGTCTCATCAAGACGGAGAGTCAAGAGAATATCTTGCAGGCGAGTGTGGAGAGAAGCGACCTCGAAGATTCAGCATGTGAAGAGGAGTCTAATGAAGAATatgaagaggaagatgatgatgaagaagacgaTGGTTGTCCACCGAGGTCATATACTGGAGGCAAATGGAAACCTGGAGACTTGATGACGAGAGGATCGCCACCGTCTTGGACAaggacttcttcttcttcaacacATGCTGAAGAATATCGAGGGAGTAACACTGGAGGGTGGAGTCTGCTTCTTGAAGAATGCGCAAGAAGTCCTGCTGTGACGGTCGACCCTCCGCCTAATTTCACTGGAGGCAAATGGAGGCCGACATTGCCAAATTCGGCAGATATAAGCGCACAGCAGGTTTGCCGTGGCACAAACTCAGATGAGGAAGATTATGTTCTTCAAGATAACAACGGAGGGAGCGACTCTAATGCCACGAGAATTACCAATACGACAATCCCACGAGTACCTCCTCCAGGTCACACGAGTGGCAAATGGGTGCCGGGCAAGCAGGTTCGCCTGGATGACGGTGGTAGCACACGGGGTGGCAGTATGGATAACATGTTGCTGATTCCGCCACTTCGAAAGTTGGGCAGCACTATCCAGTATTGGTGTGGGCCATGTAATAGGCGACTCAGCTCCAGAACGCTGTACGAAAGGCATTTGTTGTCCGAACTGCATTTCAAGAGAACTGTACAGGAACAAGAGCTGGAAGAAAGCCCGGTTAGGGTGCAGGAGGACATGAATGACAGGAGGAGTGAAAAGAGGACAGTGAAACGTACCGAGGTCTACCTCAATAGCGACCTGTGGGCCCGCAGCAAGAGAAGAAGGCTGAAGTCCGGAACAATTTCAGGGTCTCCAAGAAAGCTGAAGAGACGCCGAGATGAAGTACGCTGCGAAGTCTGCAGGTCCAAAGTATGGAGGCACTTGATCGGAAAGCACTTGGTGTCGCACTATCATTGCCGTAAGGCGCGCTTCGGCCAACCACAGGCTACAGCTCTTGTTCTGGACAACATCCACAGCGTGGTACGCCAGGCACCCTTCCAGTGCAGTCCTTGCAAATTCTATTGTAACACAGCAGCCAGCTTCAAACAGCACTGGACATCCCAGGAACATGAGCATACTGACTCAAAGATGAGTGGCCGGTACTGGTGTTCGTTCTGCAAATATGAATGTGAGAGTTCTGGAGACATGGAGTGCCATATTGACAGCCCAGTACACCGGGAGCTTGTGGCCGTCATCAACCGGTCAGTCCCTGTCGTGATCCGGAAGCGGGCAGTGCTTTCCTGTGGTACATGCAGCGAAGAGTTCCTCTACAACGCGCAGCTACGAAGGCATATCGTGCGGGCCGGTCATCACGACCCTAGCACTGGTTCCGACGCTTACCAGGAGCGCTTCAGCTGTTCCGACTGCCACTTTGTAGGAAACTCCAGCGCCTCTCTGCAACGCCACGTGCTTCACACGCACAAAGCGGAGAAGAAGGGCGCCTACTTTTGCAGCGCTTGCTCCCTCAAATTTGATTCCGCGGAGGAAGCTGCATTGCATCGTCGTGGTCAGGAGCACAAATATTCGGCTCTTGCCAGTAGGAGGGACAGGGGCTTGAGCGAAGAAGTCCTTGTTAAGAGTTGCCCTCACTGCGGAGAGGACTTCGAAAACGTTTTGCACTTAAAAACGCATCTTCGGGAGCAGCACGCCGAATTTCCGTACAGATGTGCGCGTTGTGGAATGGCATTTACGTTGCCGCAAGAAGTGTCACGCCACGTGAGAGAGGCACTCTGCATGTTCCGGCCCGACGAAAAGCGGTCGGACATTGCGTCAGAGGGAGAGGAAGTGTCTAAAATCGGTACCGATTCAGGTATTTCTACAGACATTAGCAGGAAACACGAAGAAGGCGGAGACTGCGGACCTATAACGTGCAGTCAGTGTTCGTACCGCACTGACTCGCGAGCCGAACTCTTATTTCACGAGGTACTGCACGGAGAACCGATCACTGATCCCTCTATTACAGGAGATCCAAGCGATCTAGAGGTCGGCCTTGGAaacatcacaacccagaatCAGAAGATGGCGAGGTACCAGTGTCCCCTGTGCACGCGAGTGTTCCGCAAGGCCTCTCTACGATGCCACTTGAGGACCCACACACAAGAACGGCCGTACGTCTGTACGTTTTGTTATCGCGGTTTCGGACATAGGTCCTCCATGATTTCACACATGAAACAAGAACATCGCGGAGAGGCGGGacatgtgtgtgatgtgtgtcccTTCAGGACGGCAAACAAAGCCTCGATGGACCGACACAGGCTGATACATACTCAGCGCAACAAGCCCTTCCTCTGCGCCGTCTGCGGGGCGAATTTCTTCCTTAAGAACACGCTACAGCAACACATGAAAGTGCACACGGGGAAGGATTTCAAGTGTCAACACGAGGGGTGCATCTTCGCCTGTAGGTCCCAGGCTGAGCTACGCAACCATCAGCAGGTTCATTCAGACCGCCGTCCGTACCACTGCGATACATGCAGCTATTCTGCCAAAACCAAGCCCCAGTTACTCAGGCATAGCACAGTCCATCTGATGCAGAAACCTCACCAGTGTCCCCACTGCCCATTTGCTGCCAGGATGGCATCACATCTCCGGCGCCATCTTCGCCTACACACGGGTGCCAAACCTTATCGCTGCCcctactgctcctatacttgtAACATTCTTgagaACCTGAGGAAACACGTTCTGTCGACCAGCAAACACCTAGGGAAACACCTATACGAGTGTCGTTTCTGTGAACCAGGAAACGTGTTTAAATCAAACCTGGCCCGCGATTTTCGGGTACATCTCGTCACTAGGCACCCTAATCACTTCGGATCGGCCCATCTAGCTGCGTCGTACGTTGCCGGTATTTACGACGCCAACGAAGATCCGAAGTTCGTCGAGAAACCCATCGAACTGCAGCCGCGATGGAAAAGAAGTAAGACAACAAACGTGGCTGCAATCGACGAAGGCTTCCACAAAGACGATGAAGAAAGTCAGGATAATCCAAGTGAATCAGAGGCCTTGTCTGCTCACTTTAAAACTTCTGCCGATAAACGACCTGAAACTTCCACGCAAACCAAAACTGGGATCGAGGCTTCCATATCGCCATCGAGCACCAAAACAGGCCAAGAGCAGACAACCGTAGATCCAGAAGAACTGCTTTCTATGGTTGTCGTCACAGATCCTGCTGATGACGTCATCTACATTCAACTTCCACCTGATTCGGAAACAGGAGCTATAGAACAGTATTGCGAGTCTGTTTTCTTCCCTGCAGAAGGCGACACATTTTTGTCTGTTGAAGATTTCAACAAGAGACGGTGTTCAATCGGCGACAGAAGTGCAAGCAGTGAGACCACTGTTATGCTTCCTTTAGGAGTGGAAGAAGCTGAAGAAGGAGAGGGAACAGAAGAAGTCAAGGATAGTGAGAACATGGTTCTTATTAAGGAGATTCCAATTGGACAGCATACCCACGAGGGAAGCAAGCTGGATGAAGAAATGCGTGTGATAACAGTGGCAGACGGTGAAGCTGATGAGTACCTGACGCTTCCTGAACACAAGGTGGATGCCGATCATGGGCAAGAGGAGCCTGAAATTTACCAGAACACGGTAGTGCAGTCCATAGAAGACTCGACCTCTGCAGACATGACCACCGCGCAGCAGCAACAAAGATATCTCGTCATCTTCAAATAA
- Protein Sequence
- PDIDDDTHICLKCRTTIAGLDNYVKHRKSGCATSSSSSRPLNHPDKGEIVSVSKNGTIRPAHVENDPSLKADDFFSSLELQSSAKKTTGTSPGSSIRNPCGVVTRSKASAAIMASTSSRDTPSTSQQKSDSELLGNVSSELYSPSADTDNATSTCLIKTESQENILQASVERSDLEDSACEEESNEEYEEEDDDEEDDGCPPRSYTGGKWKPGDLMTRGSPPSWTRTSSSSTHAEEYRGSNTGGWSLLLEECARSPAVTVDPPPNFTGGKWRPTLPNSADISAQQVCRGTNSDEEDYVLQDNNGGSDSNATRITNTTIPRVPPPGHTSGKWVPGKQVRLDDGGSTRGGSMDNMLLIPPLRKLGSTIQYWCGPCNRRLSSRTLYERHLLSELHFKRTVQEQELEESPVRVQEDMNDRRSEKRTVKRTEVYLNSDLWARSKRRRLKSGTISGSPRKLKRRRDEVRCEVCRSKVWRHLIGKHLVSHYHCRKARFGQPQATALVLDNIHSVVRQAPFQCSPCKFYCNTAASFKQHWTSQEHEHTDSKMSGRYWCSFCKYECESSGDMECHIDSPVHRELVAVINRSVPVVIRKRAVLSCGTCSEEFLYNAQLRRHIVRAGHHDPSTGSDAYQERFSCSDCHFVGNSSASLQRHVLHTHKAEKKGAYFCSACSLKFDSAEEAALHRRGQEHKYSALASRRDRGLSEEVLVKSCPHCGEDFENVLHLKTHLREQHAEFPYRCARCGMAFTLPQEVSRHVREALCMFRPDEKRSDIASEGEEVSKIGTDSGISTDISRKHEEGGDCGPITCSQCSYRTDSRAELLFHEVLHGEPITDPSITGDPSDLEVGLGNITTQNQKMARYQCPLCTRVFRKASLRCHLRTHTQERPYVCTFCYRGFGHRSSMISHMKQEHRGEAGHVCDVCPFRTANKASMDRHRLIHTQRNKPFLCAVCGANFFLKNTLQQHMKVHTGKDFKCQHEGCIFACRSQAELRNHQQVHSDRRPYHCDTCSYSAKTKPQLLRHSTVHLMQKPHQCPHCPFAARMASHLRRHLRLHTGAKPYRCPYCSYTCNILENLRKHVLSTSKHLGKHLYECRFCEPGNVFKSNLARDFRVHLVTRHPNHFGSAHLAASYVAGIYDANEDPKFVEKPIELQPRWKRSKTTNVAAIDEGFHKDDEESQDNPSESEALSAHFKTSADKRPETSTQTKTGIEASISPSSTKTGQEQTTVDPEELLSMVVVTDPADDVIYIQLPPDSETGAIEQYCESVFFPAEGDTFLSVEDFNKRRCSIGDRSASSETTVMLPLGVEEAEEGEGTEEVKDSENMVLIKEIPIGQHTHEGSKLDEEMRVITVADGEADEYLTLPEHKVDADHGQEEPEIYQNTVVQSIEDSTSADMTTAQQQQRYLVIFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -