Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01000432.1:828343-852841[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0066 0.32 11.1 0.2 3 19 344 360 343 361 0.95

2 6 3e-06 0.00014 21.6 2.4 3 23 392 412 390 412 0.97

3 6 6e-06 0.00029 20.6 0.6 1 23 418 440 418 440 0.95

4 6 4.7e-07 2.3e-05 24.1 3.9 3 23 448 468 447 468 0.99

5 6 0.00059 0.029 14.3 1.6 1 23 474 496 474 496 0.96

6 6 8.3e-05 0.004 17.0 1.3 1 23 525 547 525 547 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0066	0.32	11.1	0.2	3	19	344	360	343	361	0.95
2	6	3e-06	0.00014	21.6	2.4	3	23	392	412	390	412	0.97
3	6	6e-06	0.00029	20.6	0.6	1	23	418	440	418	440	0.95
4	6	4.7e-07	2.3e-05	24.1	3.9	3	23	448	468	447	468	0.99
5	6	0.00059	0.029	14.3	1.6	1	23	474	496	474	496	0.96
6	6	8.3e-05	0.004	17.0	1.3	1	23	525	547	525	547	0.99

Sequence Information

Coding Sequence: ATGGCTGGGTACAGAAGGGTGAATTATTACGAACTTTGCCGTCTTTGTACATCAAGTGAAGGTACCAAAATGCACATATTCCGTGAAGAGGGACGTCGAAGACAACTCCCAACAAAAATTCAGATCTGTCTGCCACTTCAGGTTTGTGAAGATGACTCATTGCCCAAGATAATATGTAGTCATTGTGTGGACAAACTGGAAAGCTTCTATGACTTCCGGGAGTCGTGTGTCAATGCAGAAGCTATGTTGGAGAGTTATTTCACATCTCTTCGCTACTCAGATGACTTCACACGTGAAGGAAAGGTGTATGTCAAAGATGAGAGTCCACCAAAGAAAAAGACAACTACAACAGTGGCTGTTGCAACAACAGCCACCTCTGAAGCAGAGAAACAGCAACATAGCAAGGCCGGAGCAGCTGTGGCCACTGCCACAGATGGTTTAAACAGTCTAGTGCAGGCAGCTGGTATTCAAATTGTGAGCGATGCAGATGGAACTAGAGTTCAGCAGTACAAATGTGCCATGCAGATGCAGCCTGGATCTGCAGGACCTACAGTAGTGGAGGCAGCAGCCACAGAGGCATGCTACAGCTATGAGTGCACTGCTGCTGGCACACGGACGACTGATGCCAACCCGGTAGTAGCACAAGTGACAGCAAAGGTGGAAGATGGAAGCACCCAGTGCAGTGAGACGGACTTTGCAAGCAAGGTGATATCTGCTAGGCACCATCAGTCACCAGAGAACAGTGAAGAAAGTGAAGTGTCAGctcagcagcaacagcaacaacatgcaacagcaacagcagtagcctTCACTACAGCAGGACCAGGGCAGGAGATGCTAGTACATTTTAACTTCAACAAAGACAGAGAGGGACTTTTCCGACCAGAGGAGCATGCTGCTCTGCAGAGATCTTCAATAGCTCAGATTGGCGAATTTCTGCGCATGAAgagtgtaaatattattgatGGCACTTCAGGGCCTACAGCTACACTTGTTGAAGTAGCTGCAGCACCAAATACTCCTCGTCCATGTGAACGCTGTGGCAAAATTTTTGCTACTCTTGAAGAACTTCATTCACATTCGCCATGCAGCTGCTCGACAAATCATGAATCGGAGAACAGTGGTGCAGACAGGAATGCAGGTAACGCAGCAGGCACTGGTGGTAACTTTGGTTGCGAAATCTGTGGTAAGCCATTCAAGAGAAAAGAACATCTATTTCAACACAGGAAACTCCACACTGGTGAAAGACcatatgtctgtgtgtcttgTGGGAAGGCATTCAGCCGCAAGGAGCATCTGGTCCGACATGCTGTATCACACACGGGACAGAAGATGCATGGTTGCGACCTATGTGGCAAAAGTTTTAGTCGAAAGGACAACTTACACAAACATCGCAAAACACATGGTATAGCTGGGCCGTATATTTGTGAAACATGTGGTAAATCTTTTGTTGTGAAACACTATTACCTGATGCATCGAGGAAGCCATGCCACTCCCGGTTCGTCCATGGCAAACAGTGATGGAACGGGTGAAGGTAATGGTACAAGTGCAACAGCAGAAAATCCCCTCCCATACAAGTGTGACATCTGCAGTAAGGGATTTGCAATGAAACAGTACCTTATTACACACAAACAGAGACATCGAAGTAAAAACCAGCAGCAGTTACAGAGTGGGCAGGAAGCAACAAATTCAGCTAATTTGGGGCAGTCACAAAATAACCAGatcaaagtggagagtgttggTACTAGTGAGACTCACGTGGCTGGAGCCCTTAGTCACAATAATGTTCCACTAACAACAATTAACAACACTGCTCTTCTCACACCAAACATCTTGCACCATGTGACAACACAGCCGAGTGCTGGAACCACTGCCGGAAATAACTCTGCCACTGCAGCCATGATTCAGGTGTCATCAGCTGCTGCCACAGCCTACCTCTGTACTCCAGCATCAGTAGCTGCTAATGAATTGCTCGAAACTTACAGAAGGTTGCACTCTGCATGA
Protein Sequence: MAGYRRVNYYELCRLCTSSEGTKMHIFREEGRRRQLPTKIQICLPLQVCEDDSLPKIICSHCVDKLESFYDFRESCVNAEAMLESYFTSLRYSDDFTREGKVYVKDESPPKKKTTTTVAVATTATSEAEKQQHSKAGAAVATATDGLNSLVQAAGIQIVSDADGTRVQQYKCAMQMQPGSAGPTVVEAAATEACYSYECTAAGTRTTDANPVVAQVTAKVEDGSTQCSETDFASKVISARHHQSPENSEESEVSAQQQQQQHATATAVAFTTAGPGQEMLVHFNFNKDREGLFRPEEHAALQRSSIAQIGEFLRMKSVNIIDGTSGPTATLVEVAAAPNTPRPCERCGKIFATLEELHSHSPCSCSTNHESENSGADRNAGNAAGTGGNFGCEICGKPFKRKEHLFQHRKLHTGERPYVCVSCGKAFSRKEHLVRHAVSHTGQKMHGCDLCGKSFSRKDNLHKHRKTHGIAGPYICETCGKSFVVKHYYLMHRGSHATPGSSMANSDGTGEGNGTSATAENPLPYKCDICSKGFAMKQYLITHKQRHRSKNQQQLQSGQEATNSANLGQSQNNQIKVESVGTSETHVAGALSHNNVPLTTINNTALLTPNILHHVTTQPSAGTTAGNNSATAAMIQVSSAAATAYLCTPASVAANELLETYRRLHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289248; iTF_01567355; iTF_00210270;
90% Identity: iTF_01289248;
80% Identity: -