Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01000110.1:1969685-1973525[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00024 0.012 15.6 0.5 1 23 206 228 206 228 0.98

2 8 1.1e-05 0.00055 19.8 1.3 2 23 235 256 234 256 0.94

3 8 0.01 0.5 10.4 3.9 1 23 262 284 262 284 0.95

4 8 9.8e-06 0.00047 20.0 0.9 1 23 290 312 290 312 0.97

5 8 0.0014 0.066 13.2 2.3 1 23 318 340 318 340 0.97

6 8 1.9e-05 0.00092 19.0 3.5 1 23 346 368 346 368 0.96

7 8 0.0011 0.053 13.5 4.8 1 23 374 396 374 396 0.97

8 8 5.3e-07 2.5e-05 23.9 0.9 1 23 403 425 403 426 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00024	0.012	15.6	0.5	1	23	206	228	206	228	0.98
2	8	1.1e-05	0.00055	19.8	1.3	2	23	235	256	234	256	0.94
3	8	0.01	0.5	10.4	3.9	1	23	262	284	262	284	0.95
4	8	9.8e-06	0.00047	20.0	0.9	1	23	290	312	290	312	0.97
5	8	0.0014	0.066	13.2	2.3	1	23	318	340	318	340	0.97
6	8	1.9e-05	0.00092	19.0	3.5	1	23	346	368	346	368	0.96
7	8	0.0011	0.053	13.5	4.8	1	23	374	396	374	396	0.97
8	8	5.3e-07	2.5e-05	23.9	0.9	1	23	403	425	403	426	0.96

Sequence Information

Coding Sequence: ATGGAAGTTAATGAGGACAAAGAGGCAAATATTTCGCATTTTCGTTTACTACAATTAGACGATGAAGGCAGTCTTGCCCAGAATGGATGCTCTATGAATGAGACAATATCCTGTCATTGTTTAATCTGTAATGCTACCTTGTGTGACATTGTTGAGTCTTCACATAATGTATTTGGACAACTTAAAACTCCTGATGCATCAAGAGTCTCTGTATTTGAGAAGGTTGGTCAGATATTGAATAGAAATCTGCATAGCATCAATCTTCATAGTGAAGTGGTTTGTGGTAGATGCTttaatctcctaacagaatatGAGGAAACAAAATGCAAACTGCAAAGAATACATCTGGATCTGGTAACAAAGTTTGAgactacagaaaataaacacaaggaaCCTGTAAGACAGGTGTCACAGGAACAGGTAGAGTTAGAGGAGGATAATCAGGAATGTGATGCAAACCATACTCTTGAAGATAGTAACATTCCCCTCCTAGTTATAACAGATGAAGGGAAAGTAGTTGACAGAAATGGTAAGGAGAAAGAAGCATCAGTGAAAAGAAAAAGGATCAGAACTAAGGGAAAAGGAGGTCTTACTAGTGGTGCAAAACTAAAACCATATGTGTGTTCAGTGTGTGGTAAAGGTTTTCGTGCATTCAGCCACAGAGTTGAACATATGTTGATACACCTCGGAGAGAAGCCCTGGAGTTGTGGTGAATGTAAGAAAACATTTCGTACAAAAAGTGCCTTGAGAGTCCACAGCACAAAGCATTCAGGAGAACGGCCTTACACGTGTCAGCAGTGTGGGAAATCATTTCTTGACCGATACTATTTTGAGGAACATTGTCGCATCCATTCAGGGGAAAGGCCATTTATTTGTACATACTGTCAGCGGCCATTTGCCCGAAAAAAGGACCTTGTAATCCACACAAAAAGTCATACAGGTGACAAGCCCCACAAATGTATGTCTTGCCCCAAAACATTTGCTGTCAAGTCACGCCTTGACAGACACAGTCGCATACATTCAGGCGAAAAGCCCCATCATTGTGCATATTGTGATAAGTCATTTGCTCGTCGTGATGACTACAAAGTGCATGTGCGTCTACACACAGGGGAACGCCCATTCTGTTGTGCAGTCTGTAACAGAACATTTACTAACCAGTCAAACTGTTTGGTACATGTACGAATGCATGAAGGTTCCAAACAGCGATACCCATGTCCAGTGTGTGGTCAGAGCTTTGACCGGCGTAGCAAGCTAGACAGACACATAACCATGCACCACAGGGATGTATCAAATGAACAAGCATTAGAAACCAAAGCAAAAGGTTCAACAGAGCCATCTGCAGTTCAAATTGTGGACACTGAGATCAGAAATCTGACACCTGTTTCACTCCAGCATGTTGCCCAGGTTCAAGTTGAGTCATTGGACACATCAGCTTTATCTCATCCTGACAGTGTCAGTCAGGCCATTTCACAGCCTTTGCTTCATGCAGAAACCCTGCAGAGTTTGACTGTTACAGATCTTCACACTCTGCAGACATTGCCAATAACTCAGGTAGCACAGCTGGAATGGAGTGATGGAACAGCAGCTGGTACAACCACCACTTACGTTAACATCACGCCTGGAACTTACGTTAACATTATAAATTGa
Protein Sequence: MEVNEDKEANISHFRLLQLDDEGSLAQNGCSMNETISCHCLICNATLCDIVESSHNVFGQLKTPDASRVSVFEKVGQILNRNLHSINLHSEVVCGRCFNLLTEYEETKCKLQRIHLDLVTKFETTENKHKEPVRQVSQEQVELEEDNQECDANHTLEDSNIPLLVITDEGKVVDRNGKEKEASVKRKRIRTKGKGGLTSGAKLKPYVCSVCGKGFRAFSHRVEHMLIHLGEKPWSCGECKKTFRTKSALRVHSTKHSGERPYTCQQCGKSFLDRYYFEEHCRIHSGERPFICTYCQRPFARKKDLVIHTKSHTGDKPHKCMSCPKTFAVKSRLDRHSRIHSGEKPHHCAYCDKSFARRDDYKVHVRLHTGERPFCCAVCNRTFTNQSNCLVHVRMHEGSKQRYPCPVCGQSFDRRSKLDRHITMHHRDVSNEQALETKAKGSTEPSAVQIVDTEIRNLTPVSLQHVAQVQVESLDTSALSHPDSVSQAISQPLLHAETLQSLTVTDLHTLQTLPITQVAQLEWSDGTAAGTTTTYVNITPGTYVNIIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -