Cfor003510.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01012990.1:1612265-1629685[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.31 15 5.8 0.3 3 21 6 25 4 26 0.85 2 12 7.8 3.8e+02 1.4 0.5 1 23 256 276 256 276 0.80 3 12 0.011 0.53 10.4 1.8 1 21 523 543 523 544 0.93 4 12 0.067 3.3 7.9 0.0 2 23 552 574 551 574 0.95 5 12 0.0031 0.15 12.1 0.6 2 23 598 619 597 619 0.97 6 12 0.00061 0.03 14.3 3.6 2 23 629 650 628 650 0.97 7 12 0.00013 0.0062 16.4 0.2 2 23 684 705 683 705 0.95 8 12 3.7e-07 1.8e-05 24.4 3.7 1 23 773 795 773 795 0.98 9 12 0.0004 0.019 14.9 1.1 1 23 801 823 801 823 0.96 10 12 0.0079 0.38 10.8 0.3 1 23 829 851 829 851 0.97 11 12 3.1e-05 0.0015 18.4 2.4 1 23 857 879 857 879 0.98 12 12 7.2e-06 0.00035 20.4 1.1 1 23 885 907 885 907 0.98
Sequence Information
- Coding Sequence
- ATGGGAACTTTAGTTTGTCCATTGTGTTGTGATGAAGAATTTTCAAACCAGCTGTCACTCAGATATCACTTGCTGAGTATCACAGATAATGTGTACTGCCCTGAATGCTGTCAACGATTTGATAGCATTCTTCAGCTTGCTGAACATTTGGATGGTATGTGTGGAAAAGCAGAACTTGTGAACAGTATTGAAGAATATACACCAGACTCAGATATGGTTATGGCAGAAGGCATGACTGAGGAAGATAAACTGATAATGCATGAACGTAACACGTGTGAAACAGAAGTTGTCACAGAGATAAATAATCCAGGAAATATGAGCTCTGATGTTTGTGAGGAAGTTATGCAAGAAGCAGTTTCAGTTGCTGCAAACCCCCAGTTGGATGATTTGGAATCTTTGTGCCTGGTGTCAGCTGGAGATATCCAGGAGGCAGCTGTTACTGTCATCAAGAATGAATACGTGGATATCACTAAACAGGAATTAGACGCAGTTGGGCATGGAAATTTAAGAGATGTAATGGAACAGAGTTATGCGAGCGGGAACTATGAAGTGATGGCTGAGAATTCTACTGGATCGCAAGACACCCTACCTGAAAAAGTGTCTGGTCTCGAAACAAATGAATTTGTTGGAGCGGATGGTCAGGAGTGTGGTGCGGTTGTGGACGGTTTGTTATCAGCTGATGGAGCAGTGAGTGGTAGCTTGGAATCGCAGACTGTTTTACCTGAAGTGGGATGTCCAGGTGATAGACAGATGGGTGTTTTGGAGTATTCATGCTCAAGCTGCAGGATCACATTTGGTTCTGTAATGGAACACATAAGAATGTACCATGGTGGACAGGAAGTAGTTATTGAGGTGCCACAAGCTAAGAAAACTGCTCTTGACAAGTTGATCAGGGCTTCAAAGTCAGTTCTGACAACCAGTGATAAGCAGATGACAGACATGGAAGTTTCACCTGAGCGTAATGATACCAGTGAGAGAGCAGAACTGCAAGAGACAATGGATGCAGCAAATGTTGTGTCCACTTTTTCTCAAATTCGGCAACAGGCATCAAAAATTCATCCCATAAGCCAGATAAGTGTATTGAATCACACTGCTGTTATTAATGAAGCTAATGAAAATTTGAAGCGACGTGTAtggtttaaggaaaaaactCGAGTCATTGCagatgaagagaaaataaagaaaattgttcCTGGTCCAAAACGGGTTATTCCCACTGTTCGTACCAGTAGTGAGCTAAAATACATCAGCAAAGAGGTTAAAATTGGCAGATTCTGGGAAACTAGAGCTGAAGATGTATCGAAGAGTGACAGTGCCAACagaagcaataaaactgaagtgCCCATGATGACTTTGCCTTGCGAACTGAAGAAGGAGAATAAGACACCCCTCTTCAAGAAGGACACTAGAACCAGCCTTGAGAAATTGTTTAGTGGCAGTTTTTTATTAAAAGGGACAGGAGGTCGTGGAACTAGACCAGGTCCATATCTTGGGGTAAATAGAGTGCCAGAAGTAAAGGTCATTATGAGTCCTGGTGACAAAGGAACAGAGAATGCAATATCTGTATTTACTTGTAGTACTTGTCAGAAAGAATTTGGTAATGTGTCTGCATTTGAGAGACATTCTTGTACTATAGCTAAAGCATGTATGCTGGTGTGTAAGTTGTGTGATGAGGACGTTACTGATATGAAAGCAATGCGAATCCACATGGAATCTGTTCATGACATTAAGACTGAGATTCCCAGCATGGCAAAGAGGAAGTACAACATGCAGATGTTACCAAACCCTGTGAAATGTGAATCATGTGATGTGACATTCACAACGATAAGATCTTTGAAGTTACACAGTAAGATTCATGAACGTCCAAAATTGAAGGTTCCTCTAGAGTGTCCAGTTTGCCATAACATGTGTTCTAGCAATCGAACACTGAgacagcacatgaaggtgcacACAGAACTGTTACCTGTGAAGAGGAGTGAAGATGGTGAGGGAGCAAAGGATGAGGACATGAATGACAAGGAACAGAAGAACAGGGAGATCAGTTTGCTTGTATGTAAAGTATGCTACAAGTCATTTGGCAACAATGAGGACTTGCGAGTGCACTGGCAGGAACATTTGCTGCAGGTAAAGgtagaggaggaagaagaagggcAAAAAGTGGTGGAGCAGGCACATGATGGAATGACAGAAACTGCAGTACCTGAGGAGGAAGAGGCGCGGCACAAGAACAGCACTTCCCCTTGCGTTAGGTGTCACAAGGAGATAGATGAGAGTTGTAAAGAGGAACATATGGCAAAACATTTCTCCCTGTTGAGGTACAGTTGTCCAGTTTGCAACAAGAGCTTCAGTAAACATGGCCACCTCAACATGCACATGCGAATCCACAAAGGAACCAAAGAATACTCATGTATCCATTGTGGCAAGATATTCGCAAACATGAATCTTCTGAGAACACATATCCAGTCTCATATGGCCCAACGCCCTTACATGTGCGGCTTCTGTGGACGTGGCTTCTTTCGACCTCGTGACAAAGTGGAGCATGAACGCATTCATACAGGAGAGAAACCTTATCCATGTTCAGTGTGTGGGATGCGGTTCCGAGTACGATATTGTCTCTCTCTTCACATGAGACGACACACAGGTGTCCGTCCATACAGCTGCAAGGTGTGTGGCAAGACGTTCCGAACTGGGACAGCATTCAAGGCTCATACCAAGATACATCTGGATGAACGTGCTTACAAGTTGGTGTATggcaggcccgctcaacctgTAGCTTATGGATGTGTTGCCTGCGACACTCTGGGGATATTCAAAATCAGAAAATGTCTTCTAATCCATTCCCTGGCAAAGTTGAGgaccaaattttgctga
- Protein Sequence
- MGTLVCPLCCDEEFSNQLSLRYHLLSITDNVYCPECCQRFDSILQLAEHLDGMCGKAELVNSIEEYTPDSDMVMAEGMTEEDKLIMHERNTCETEVVTEINNPGNMSSDVCEEVMQEAVSVAANPQLDDLESLCLVSAGDIQEAAVTVIKNEYVDITKQELDAVGHGNLRDVMEQSYASGNYEVMAENSTGSQDTLPEKVSGLETNEFVGADGQECGAVVDGLLSADGAVSGSLESQTVLPEVGCPGDRQMGVLEYSCSSCRITFGSVMEHIRMYHGGQEVVIEVPQAKKTALDKLIRASKSVLTTSDKQMTDMEVSPERNDTSERAELQETMDAANVVSTFSQIRQQASKIHPISQISVLNHTAVINEANENLKRRVWFKEKTRVIADEEKIKKIVPGPKRVIPTVRTSSELKYISKEVKIGRFWETRAEDVSKSDSANRSNKTEVPMMTLPCELKKENKTPLFKKDTRTSLEKLFSGSFLLKGTGGRGTRPGPYLGVNRVPEVKVIMSPGDKGTENAISVFTCSTCQKEFGNVSAFERHSCTIAKACMLVCKLCDEDVTDMKAMRIHMESVHDIKTEIPSMAKRKYNMQMLPNPVKCESCDVTFTTIRSLKLHSKIHERPKLKVPLECPVCHNMCSSNRTLRQHMKVHTELLPVKRSEDGEGAKDEDMNDKEQKNREISLLVCKVCYKSFGNNEDLRVHWQEHLLQVKVEEEEEGQKVVEQAHDGMTETAVPEEEEARHKNSTSPCVRCHKEIDESCKEEHMAKHFSLLRYSCPVCNKSFSKHGHLNMHMRIHKGTKEYSCIHCGKIFANMNLLRTHIQSHMAQRPYMCGFCGRGFFRPRDKVEHERIHTGEKPYPCSVCGMRFRVRYCLSLHMRRHTGVRPYSCKVCGKTFRTGTAFKAHTKIHLDERAYKLVYGRPAQPVAYGCVACDTLGIFKIRKCLLIHSLAKLRTKFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289170;
- 90% Identity
- -
- 80% Identity
- -