Cfor003668.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01003593.1:118918-143398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8e-05 0.0014 18.5 0.2 1 23 552 574 552 574 0.99 2 12 7.6e-05 0.0037 17.2 3.3 1 23 579 601 579 601 0.98 3 12 0.0014 0.066 13.2 1.6 1 23 607 629 607 629 0.92 4 12 0.0047 0.23 11.5 1.4 1 23 634 656 634 656 0.97 5 12 8.1e-06 0.00039 20.2 0.1 3 23 664 684 662 684 0.97 6 12 7.7e-05 0.0037 17.1 1.4 1 23 690 712 690 712 0.98 7 12 0.12 5.8 7.1 6.9 1 20 717 736 717 739 0.95 8 12 0.0023 0.11 12.5 0.7 1 21 745 765 745 766 0.96 9 12 0.0004 0.02 14.9 0.8 3 23 844 864 842 864 0.95 10 12 0.0002 0.0098 15.8 1.6 1 19 870 888 870 893 0.94 11 12 5.5e-05 0.0027 17.6 3.5 1 23 899 921 899 921 0.98 12 12 0.018 0.89 9.6 4.6 1 23 927 949 927 949 0.98
Sequence Information
- Coding Sequence
- ATGCCACTGATTGTAACAATCGAGATTCTCGATGTACATATCACCGGTTGGAAACACGCACGCTCGTTGGTATCGTATGAAAGAATGGAACGAAAAAGGTATAATTGTTCTGTACCGACTTGTGTAAACTATTGTAATAACTTAAGGGAGCAGTGTTACAGATTTCCCGCCAATAAGAAGGTTGCAGAAGACTGGGTTCGAGCTGTAAACAACCCGAAACTGAGAATTGAAGAAGCACATATTTATCGCTTTTCCAAGTTTGTGTGTCATCGGCATTTTGCAACTCATCAGTTCACTACTCCTAAAAGGTTGCGTCTCAATCGGGGTGCTATACCTACACTGTTTTTGACACCATCTGATAACTTTGAGAATTGTCGTTCAGAGTCAGAGATCCATAAGTTTGTATCGTCTGTGAGGAATGGTGGTACTGACAAGTTTGCAGAGCCACCTGTACCGGATAGGTATCAGCTGGAAAAGGCAAATGTTAAAGAAGGGACAAATATTGGTAGATGTGAAGAGGCTGGAAGTCAGCTACTTTCCCATTTAGACGGTGGAATGCATAGCTGTGCATACAGTAAAGTCAGAGTTAAACAGCTGCCTCAGAAAGTTAAAGTACAGGAAGACAATCGGTTGATAGAAGATATTTTGACAGAGAGTAGTGCATCAGAACATGCTATTTCAAATGGAAATCGAACTGACCTGCAGAATGTCTGTAGAGAACCAACGGCAGATGTTGGTGACACTGCGGTAGATGGAAGAGAGCCCTCTGAAGTGTGTGATACAGGATCTCATCAAGGGAATACTGATGAATGTgaagacataaaattaattccaaatgAGTCTTATATGGTAGCAACAGATACATGGGAATATTTACCAAATGAGATATGCCGTCTGTGTGCGTCTACAGATGAACATCCAAAGCAGTCGATTGTTGGCTGGCTGCACTTGCTGAATGAAGTAATTCCAGATTTGGTGGCTTTGAATGATGGACTTCCCCAACATGTGTGCAGGCCTTGCACAAACAAGCTATATACATGCAATAAGATAAAGGCTGATTTTATTGAAGCATATAAGAAGCTCCAAGAATGTTTTGGATTTACAAAGTCACCAGGAATTCAGTTGCTTCATCTTCCAGCAGCTGTGTCTAATTATCAGACCTTTAATGAAATGACCGAAGAACAACTAGTGTCTGAGGACAAACAGTTAGTATATGATGTTGAAGCACATTTGATATCTGACGTTGAGGAACAGTTAATGTCTAAAGATGAAGAACAGTTAGTGCCTGGGGGTGCAGAACAGTCAGCATGTGGGACTGAAGAGCCATTAGTGTATGAAGTTGAACAACTGGCATCTGAGGTTGAGGAACAATTAGTATATGAGCATGAAGAACATTTAGGGCCTGTGAATGCTTCTGAAGATTTTTGCACAGTTAAATCAAGGACCTGTAAGTTAATTGAAGTCAAGGAGGTGCCCTTAAACAATATGAGTGATATGCCTTTAAATGTTGAAGAATCTGCCATTTCTTATATTGATAGTGCGGCAATCATCAAAGGCAATTCCCCAGAAGATAAATCAGACCATGCTGGTAACATCTCAAGTGTGTGTGACATCAAGGTACAGAAAGTAGAAGTGATAAATAAGAAGTATAAGTATGTATGTGGTGAGTGTGAGGAAATGTTCACAATAAAAGGAGCTCTAACTAAACATAAACGTACCCATTTTGGAACAGAGTTTGAATGTGACTATTGTAAGAAGCAGTGTACGTCTGCAACGCAGTTGAATGACCATAGACGTATTCACACCAAGGAGTTACCATTCATGTGTGAGATCTGTGGAAAATGTTTCCGGACTGCAATGATTTTGTCTAACCATAAGTATGTTCATAAACCACGCATTTACGCTTGTGAAGTATGTAATAAGAAATGGAGCAGTAAGTTTTACTTAACACAGCACAAGAAGGTACACTCTTCAGAGACAAAGATGATATGTGAGGTGTGTGGGAAAATGGTAAACACTCCTTTCAGCTTGGAGATTCACATGCGGACACATACAGGTGAAAAACCTTTTCAGTGTGCTGTATGTGGAAGATGCTTTATTACTGTTGGAAGATTGAGAAATCATAGGCTTACTCATGCAGATAAAAATTTTCGATGTGATTTTTGTGGTAAAGAGTACTATTTCAAGTGCGAATTACTCCGGCACCAGGAATGTCATCATAATATGAAGCTTTACAGATGTCCAGTCTGTTTCACACAATTTGCCAATTCACAAAAGATGAACAGACATCGTAAGATATATTGTAAGAAGCCTATCTGTATTGTTTGCACTGAGACTTTTTTGAGTGATGAGATGCTGCATGAACATCAGATAATGGAACATGCTGATGAAGAGGTGGCAGTAGCAGCAAACTATTATAGGAGACGACAGCATTGTAAATGTCGGATTTGTTCTCAGTCTATGTACAGTAAATGGTGTCTGCTGAAACACATGCAATGTCATGAAGACTACAGTTATAAATCACTTGCATGTGAAAAATGtccaaaaacattttcttctacAAATATGTTGCATGCACATAGGATATGGCATAGTGAGCTGCGTTTGTTTAGGTGTGCAACTTGCAGCAAGAGCTTTAGAACAAAGTACACACTCAAGTGGCATGATTTGTCAGTCCACAAAAATGAACCTCCTTTTCATTGTCCTTCCTGTGACCAACAGTTTAAAAGACTTTCAGACTTGACTGTGCACAAGAGAAAACATACAGGTAAGAGGCCATTTACATGCCCAATCTGtatgaaaaaattcttcacaaaaagttGTGTGTTGAAGCATGCCAAGAAACATTCCCAAAGTAGTGCAAATGTCGCATGGAGGGAAGTGGTTAATGGAGTTGTACCTGTCAGCGAAGCTGTTCTTCCTTCACAAGACTTGTCCTATGATATTGGTGTAGCAGAGGAAGTGGTTTATCTAAACCAAGACCTGTCCTGTGATATTGGTGTAGCAGAGGAAGTGGTTATCTGA
- Protein Sequence
- MPLIVTIEILDVHITGWKHARSLVSYERMERKRYNCSVPTCVNYCNNLREQCYRFPANKKVAEDWVRAVNNPKLRIEEAHIYRFSKFVCHRHFATHQFTTPKRLRLNRGAIPTLFLTPSDNFENCRSESEIHKFVSSVRNGGTDKFAEPPVPDRYQLEKANVKEGTNIGRCEEAGSQLLSHLDGGMHSCAYSKVRVKQLPQKVKVQEDNRLIEDILTESSASEHAISNGNRTDLQNVCREPTADVGDTAVDGREPSEVCDTGSHQGNTDECEDIKLIPNESYMVATDTWEYLPNEICRLCASTDEHPKQSIVGWLHLLNEVIPDLVALNDGLPQHVCRPCTNKLYTCNKIKADFIEAYKKLQECFGFTKSPGIQLLHLPAAVSNYQTFNEMTEEQLVSEDKQLVYDVEAHLISDVEEQLMSKDEEQLVPGGAEQSACGTEEPLVYEVEQLASEVEEQLVYEHEEHLGPVNASEDFCTVKSRTCKLIEVKEVPLNNMSDMPLNVEESAISYIDSAAIIKGNSPEDKSDHAGNISSVCDIKVQKVEVINKKYKYVCGECEEMFTIKGALTKHKRTHFGTEFECDYCKKQCTSATQLNDHRRIHTKELPFMCEICGKCFRTAMILSNHKYVHKPRIYACEVCNKKWSSKFYLTQHKKVHSSETKMICEVCGKMVNTPFSLEIHMRTHTGEKPFQCAVCGRCFITVGRLRNHRLTHADKNFRCDFCGKEYYFKCELLRHQECHHNMKLYRCPVCFTQFANSQKMNRHRKIYCKKPICIVCTETFLSDEMLHEHQIMEHADEEVAVAANYYRRRQHCKCRICSQSMYSKWCLLKHMQCHEDYSYKSLACEKCPKTFSSTNMLHAHRIWHSELRLFRCATCSKSFRTKYTLKWHDLSVHKNEPPFHCPSCDQQFKRLSDLTVHKRKHTGKRPFTCPICMKKFFTKSCVLKHAKKHSQSSANVAWREVVNGVVPVSEAVLPSQDLSYDIGVAEEVVYLNQDLSCDIGVAEEVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -