Cfor007159.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000462.1:2202760-2220112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6e-05 0.0029 17.5 0.1 3 23 596 618 594 618 0.95 2 10 0.0029 0.14 12.2 4.8 1 23 624 648 624 648 0.98 3 10 4.1e-05 0.002 18.0 0.6 1 23 654 678 654 678 0.97 4 10 0.022 1 9.4 0.1 2 23 685 708 684 708 0.95 5 10 0.0024 0.12 12.4 2.8 1 23 715 739 715 739 0.98 6 10 0.0014 0.068 13.2 0.9 2 23 747 770 746 770 0.94 7 10 1.4e-06 6.7e-05 22.6 0.4 1 23 776 800 776 800 0.94 8 10 5.2e-06 0.00025 20.8 1.3 1 23 806 830 806 830 0.98 9 10 6.3e-05 0.0031 17.4 0.9 1 23 836 860 836 860 0.99 10 10 0.046 2.2 8.4 5.9 1 23 873 898 873 898 0.97
Sequence Information
- Coding Sequence
- ATGGCTAGCACAAGGATTCCTCCGGCAAATCGAAAGGGCCGCGGGCGAATTAAATGTGTTTACGACGATTTGAGCAAACTTTCATTTAATAAAGCTACGAATTTCGTCAGTATGTGTTCAAAGACCACTCTTCAAGAAGACAACCAGGATGCCATTCAAAGTCCGCGTGATGTTGATTCCGGAAGTGAATTAGAAATTTCTACatctacaaatttttctttatctaCCCAAACGGAGATAGTACATGACATTGCTGGTGAAAATGTTGACGAATGGTTTAAACAAAGAACTGAATCTGTATCGAGTATAGATTTGGATGCTGTAATGAAGAATGAAGGGATGGACACAGCTTACTTAACTGAAAACATTGGTCACAATTTTCTATCAAACAAAGATGTAGATATGACATGTatagttacaaatatttgtgacataGGTTTAGGCTTAGATATACCTACTAATGCATCTTCTAGGTCCAAAAGTAAGCCAGTTACAGAGACAGACTgtgataatgtaatattaagCAATTACTCTTCAGACCAGGATACCCTTCTAAATGATTTGAATAGAAGTGACCTGTTAGATAAAGACATACTAGTTGGAAACAGTGGAATTAGtagtttacataaaatgaacctTCTTGATGCAGTGAAACAGAATCATTCTGCAGATCATGTGATTGAGCCAAATGAAGAGGAATATACATCACTGGAAGATCCTCCCAATACGAAGCAGAAACAGGAATTTAAGGAAAGTCTTTGGACTGGGAATGAAATAACTGATACACAGCCATCGATAGAAACTGTGAAAGAGAAGGCAAATTGGGAGAGTTTATCAACCACAGGTAAACGAAGTGTGGATGGGGATTCAGAAAAAGAAATTGATTTtcctgaattaaatttaattaccttCCAAATTGACCCAAATGATGCCATGTGTAGTATTAATCAGGTACCTCACATAGAAATAAATCATAAAGACATATTAGTTTCCTCCACAACAGATGATGGCAATAAAGATATCCTGAACATTAAAAAGGAAATTCCTTCTGCACCAATAGACTTGTCAAGAAAGAAACAGCTGGTTATATCAACAGAAACTGGTAACCCAATGAAAAGTGTTCCAAGTACAGGTACAATCTCATCACCTGTTTCTAAAAGCACTGTGCTTCCTACATTAAATCCACGTAGTCTGTTGAAAAGCCCTCTGAAAACAACAAATGTTGCAAAGAAATCAAGCATTCTAAAGTCTACGGGTGTTTCTGGTTCAACCTCACAATCAAAATCGACTGCTGCGGGTGGGACAGCACCTGTTTGTACACCTCAAGATAGTTTAAAAGTAACAGCATCCCCAAAGAAGCCATCGTCAATGGCTATCATAGCCATATCAACAGACAAATCAAAGAATACAACTGAAATTGTTATCAATACACCATATGGTGAACACGTTTTCAAGGGAAAGACAACTGATCTAATGAAGGCCACATCTGGACTATGGCAGAAGTTGGATAATAATAAGATACAAAAAGCTGAGCAGCCTCTGACCATCAGTATGATGAACGGAACGGCAGAGCAGCCATCAGCACCAGATGTGTCTCATGGGGACCAAACCACATCACTAACTACTGATGGTCCAGATGATTTGGGTGAGGAGGGAGAAGAATATAGTGATCTTACAACAGAGGAAGACCGGCCAGTAGTGGAAGCACTTGCTGAGTGTGGCATAGCTGTAGACAAGGATAACATCTTCTGTGTGACAACAGGAAGTGGCCAGAAGTTGTGGATCTGTCCAGTTAAGGACTGTGACAGAATGTACCCACGACAGAGTATGTTGAaggtccatatcctgagccatttCAATGTCAGACCTTTCAGGTGTAATTTTGCAGGATGCCACTGGTCATTCTATACATATTTCAAGCTGAAAAGACATAAAGAAACCCATCTCAAGAGGAAAGATTTTGTGTGTCCAGTAAAAGGTTGTGAACGTCGATTCACCACAATATACAATCTTAACACACACCAGAAGCTGCATGCACGACCTCTTGAAATGGTGTGTCCAGTTGAAATATGTGCTGCACGGTTCCAGACCAAGAGAAGTCTGGAATTGCACTTGAAAAGTCATGACAGTTATCATGCACCTTACAGATGTTCATATGAAGGTTGTGGAAAACACTATTATTCACTGAACTCACTCAATTCTCACTCACGGAGCCACCAGCACAAGGAAGAAGAGGTTCGGTGTCAGTGGGAAGGCTGTGGAAAACTCTTTGACAAGCCATGCAGGCTCAAAGCACATATGAGGTCTCATACAGGGGATAAGCCTTATCCCTGCCTGTTCCCGGATTGTGGGTGGTCTTTCTCTAGTGCAAGCAAGTTAAAACGTCACCAACAGAAGCACACTAATGAGCGCAAATTTCAGTGCAGTGCTGAAGGTTGTGGGAAGTCCTTCATGAGATCAGAACACCTCAAGGAGCATACACTTACACATATTGGACAAAGGAATTTCAAGTGCCCATATGAGTACTGTGGCGTAAAATTCTCAGCAAAGAGTAGTCTGTATGTTCACTTAAAGAAGCATAATAAACCAAAATCTGCGACAGGGGATAAGGTTGTATATCACTGTCCCATAGAAAAGTGTACCAGAACTTACACCTGCAAGTCCAGTCTAAGGCAGCACATGTTGAAGTTCCATACGCCAGTCCTCGCTAATGATGCTAGTCAGTTAGATTATATTGCATTGCTAACAGGAGATGATGATTTAGCAGCATTGGAGGGGTTGCAGTTTTCTGGAGATATGACACCAGCCGTCAGTGGTAGCATCAGTTCTTTAAATGCCATCAATCTTATTACACCACCTTCCATGTTGATAAATGGCAGTGATGGCATTGGTTCTCTTCCACCTGAATTTATCAGTACAGGTATGAATGGAATAAGTGATTTCCAATTACCTGGAATTCTGCCATCAAAAATTTGTGCCAGTGGAAGTAGTGGAATTGGATCCAGTAGTGGAACCAACAGCAGTGTTGTGACACATGTCGTGTTGGCACCATCTGATGCCCAGAACTCAACTCTCGCCATGTCGAATCAGCCAGATATTGGTGATGCTACCGATCAGCCCATGAGTATGCCCATGTTTGAACCAGTTGCCCTTGAAGCGGACAGCAGGACAAGTTCTGAGCATGGTTGTGCACGAACCAGTTTCACGTACCAGGACATTGTCCAAGACAGGGAGCGCAGAAGAGGAAACACAAGTCCTTCGTCTACAGATCCCAGCAGTAGTGCCACAAGCCTGAGAGTGCCAACAGATGTTGTGCTAGGAACAGGACTTCTAGGAAGCAGCCAAGACATTGCACATAGCTTTTTGCTTCAGGATGATTTGCCAAGCCACCATCACAGTTTGTATCACGAGGACCATCTGATGGCTGTAGGTCCCGGTGTTGGGGAGTTACAGGTATTGCTATTAGATTCAGCCAGCAGCACTCGCCATGAATTTGCTGAATCAACCATCAACCTACGAGATCTGGAGTAG
- Protein Sequence
- MASTRIPPANRKGRGRIKCVYDDLSKLSFNKATNFVSMCSKTTLQEDNQDAIQSPRDVDSGSELEISTSTNFSLSTQTEIVHDIAGENVDEWFKQRTESVSSIDLDAVMKNEGMDTAYLTENIGHNFLSNKDVDMTCIVTNICDIGLGLDIPTNASSRSKSKPVTETDCDNVILSNYSSDQDTLLNDLNRSDLLDKDILVGNSGISSLHKMNLLDAVKQNHSADHVIEPNEEEYTSLEDPPNTKQKQEFKESLWTGNEITDTQPSIETVKEKANWESLSTTGKRSVDGDSEKEIDFPELNLITFQIDPNDAMCSINQVPHIEINHKDILVSSTTDDGNKDILNIKKEIPSAPIDLSRKKQLVISTETGNPMKSVPSTGTISSPVSKSTVLPTLNPRSLLKSPLKTTNVAKKSSILKSTGVSGSTSQSKSTAAGGTAPVCTPQDSLKVTASPKKPSSMAIIAISTDKSKNTTEIVINTPYGEHVFKGKTTDLMKATSGLWQKLDNNKIQKAEQPLTISMMNGTAEQPSAPDVSHGDQTTSLTTDGPDDLGEEGEEYSDLTTEEDRPVVEALAECGIAVDKDNIFCVTTGSGQKLWICPVKDCDRMYPRQSMLKVHILSHFNVRPFRCNFAGCHWSFYTYFKLKRHKETHLKRKDFVCPVKGCERRFTTIYNLNTHQKLHARPLEMVCPVEICAARFQTKRSLELHLKSHDSYHAPYRCSYEGCGKHYYSLNSLNSHSRSHQHKEEEVRCQWEGCGKLFDKPCRLKAHMRSHTGDKPYPCLFPDCGWSFSSASKLKRHQQKHTNERKFQCSAEGCGKSFMRSEHLKEHTLTHIGQRNFKCPYEYCGVKFSAKSSLYVHLKKHNKPKSATGDKVVYHCPIEKCTRTYTCKSSLRQHMLKFHTPVLANDASQLDYIALLTGDDDLAALEGLQFSGDMTPAVSGSISSLNAINLITPPSMLINGSDGIGSLPPEFISTGMNGISDFQLPGILPSKICASGSSGIGSSSGTNSSVVTHVVLAPSDAQNSTLAMSNQPDIGDATDQPMSMPMFEPVALEADSRTSSEHGCARTSFTYQDIVQDRERRRGNTSPSSTDPSSSATSLRVPTDVVLGTGLLGSSQDIAHSFLLQDDLPSHHHSLYHEDHLMAVGPGVGELQVLLLDSASSTRHEFAESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289214;
- 90% Identity
- iTF_01289214;
- 80% Identity
- -