Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01002607.1:154311-156805[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5e-08 2.4e-06 27.2 0.5 1 23 101 123 101 123 0.98

2 9 0.00035 0.017 15.1 6.7 1 23 129 151 129 151 0.98

3 9 0.0067 0.32 11.0 7.4 1 23 157 179 157 179 0.98

4 9 7.7e-08 3.7e-06 26.6 2.5 1 23 185 207 185 207 0.99

5 9 0.0004 0.019 14.9 5.4 1 23 213 235 213 235 0.98

6 9 1.6e-05 0.00078 19.3 5.4 1 23 241 263 241 263 0.98

7 9 0.00085 0.041 13.9 5.8 1 23 269 291 269 291 0.98

8 9 0.00096 0.047 13.7 5.1 1 23 297 319 297 319 0.98

9 9 1e-05 0.00049 19.9 2.3 1 23 325 347 325 347 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5e-08	2.4e-06	27.2	0.5	1	23	101	123	101	123	0.98
2	9	0.00035	0.017	15.1	6.7	1	23	129	151	129	151	0.98
3	9	0.0067	0.32	11.0	7.4	1	23	157	179	157	179	0.98
4	9	7.7e-08	3.7e-06	26.6	2.5	1	23	185	207	185	207	0.99
5	9	0.0004	0.019	14.9	5.4	1	23	213	235	213	235	0.98
6	9	1.6e-05	0.00078	19.3	5.4	1	23	241	263	241	263	0.98
7	9	0.00085	0.041	13.9	5.8	1	23	269	291	269	291	0.98
8	9	0.00096	0.047	13.7	5.1	1	23	297	319	297	319	0.98
9	9	1e-05	0.00049	19.9	2.3	1	23	325	347	325	347	0.99

Sequence Information

Coding Sequence: ATGAGTGAGGAACGTCTAGCGAGGTTACTAAGAACACTGCATTCCCTTGCAACGAGAGTGCCAAGGATTGTACTGTGTCGCGCTGAAGACATATTTCCTGGTCTACAGACGAGCATGAGAgtttgtgttgctgaagatgcagaAGTCACATCCAGACCTCAGACTGTGCATATGTCAGAACCACAGAATAATGATGCTAGACCAGAAGAGTGTGTAAGTGATGTACAGTACCCTTGTGATATTGGTGACAACTCAGTTACTGAGGACACCAGTGCAAGAAAACCTAGACCCAGATGTTCTTATGTATGTGGCATGTGTAAGAAATCATTTACACGTAAAGGTGCATTGAAGGTTCACTTACGTGTTCATACTGGGGAGCGTCCCTTTTCTTGTCACCTGTGTAAGGAAAGATTCACACAGCGTGGTAACTTGAATTGTCATCTACGTACACATACTGGTGAGCGCCCTTATTCTTGTGACCTTTGTAGGAAAAAATTCACAAAGCGCAGTAGCTTGCATTGTCATCTCCGCATACATACTGGTGAGCGACCTTATTCTTGTGATGTATGTAAGAAAAGATTCACAGATAGCAGTAACTTGAATTATCATCTGCGCAAACATACTGGTGAGCGACCTTATTCTTGTGACGTGTGTAAGAAAAAATTCACACAGAGCAGTGGCTTGCATTGTCATCTCCGCATACATACTGGTGAAAGACCTTATTCTTGTGACGTGTGTAAGAAAAGATTCAGAAATAGCAGTAACTTGAATTGTCATCTACGCAAACATACCGGTGAGGAACCTTattcttgtgatgtgtgtaagaaaaGATTCACATATCACAGTAGGTTGAATTATCATCTGTACAAACATACTGGTGAGCGACCGTATTCTTGTGACGTGTGTAAGAAACGATTTATATGTCACAGTACCTTGAAAGTGCACCTACGCATTCATACTGGTGAGTGCCCTTATACATGTGGTGTATGTAAGAAATCTTTCATAGTTCGGTCTGCTTGGAAGAAGCATCTGTGTACTCATGCTGGAGAACGTTCCCTctcatgtgat
Protein Sequence: MSEERLARLLRTLHSLATRVPRIVLCRAEDIFPGLQTSMRVCVAEDAEVTSRPQTVHMSEPQNNDARPEECVSDVQYPCDIGDNSVTEDTSARKPRPRCSYVCGMCKKSFTRKGALKVHLRVHTGERPFSCHLCKERFTQRGNLNCHLRTHTGERPYSCDLCRKKFTKRSSLHCHLRIHTGERPYSCDVCKKRFTDSSNLNYHLRKHTGERPYSCDVCKKKFTQSSGLHCHLRIHTGERPYSCDVCKKRFRNSSNLNCHLRKHTGEEPYSCDVCKKRFTYHSRLNYHLYKHTGERPYSCDVCKKRFICHSTLKVHLRIHTGECPYTCGVCKKSFIVRSAWKKHLCTHAGERSLSCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -