Basic Information

Insect: Coptotermes formosanus
Gene Symbol: Clamp
Assembly: GCA_013340265.1
Location: BLKM01000432.1:1286231-1287814[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.6e-06 0.00047 20.0 2.2 1 23 85 107 85 107 0.99

2 8 4.1e-05 0.002 18.0 0.6 1 23 130 153 130 153 0.96

3 8 7.7e-05 0.0037 17.1 2.6 1 23 289 311 289 311 0.97

4 8 2.9e-05 0.0014 18.5 0.2 1 23 317 339 317 339 0.98

5 8 4.4e-05 0.0021 17.9 1.5 1 23 345 367 345 367 0.99

6 8 1.1e-07 5.5e-06 26.0 1.9 1 23 373 395 373 395 0.99

7 8 9.3e-06 0.00045 20.0 0.7 1 23 401 423 401 423 0.98

8 8 1.9e-05 0.00093 19.0 1.1 1 23 429 451 429 451 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.6e-06	0.00047	20.0	2.2	1	23	85	107	85	107	0.99
2	8	4.1e-05	0.002	18.0	0.6	1	23	130	153	130	153	0.96
3	8	7.7e-05	0.0037	17.1	2.6	1	23	289	311	289	311	0.97
4	8	2.9e-05	0.0014	18.5	0.2	1	23	317	339	317	339	0.98
5	8	4.4e-05	0.0021	17.9	1.5	1	23	345	367	345	367	0.99
6	8	1.1e-07	5.5e-06	26.0	1.9	1	23	373	395	373	395	0.99
7	8	9.3e-06	0.00045	20.0	0.7	1	23	401	423	401	423	0.98
8	8	1.9e-05	0.00093	19.0	1.1	1	23	429	451	429	451	0.97

Sequence Information

Coding Sequence: ATGTATGCTGCAGACAAGAGTAAGGAGCAGGAAAAGGCCACAAATAATGCTACAGCATCAGACTTCCCATTCTGTTATAATGTCAACATGCTGCAGAAAGTCCATCAACAAAACTCCACAGCAGGTGTTCCTGTTGGGGGGATTACTGGTGATGATAAGGGATGTTACAGATTTGATGTAGCTCAGCCTTTTGGCTACAACTATGCTCTTGTGAATCAGATGTCCTTGGCGGCAGCAGCATCGACAGCAACATTCAAGTGTGATGTTTGTGGTCTCGTATTTGGCCATCTCTCACTCCTGAACCATCACAAGAGGATTCATAATACCAGCAACgtgacaacagcagcaacacagAACAATCAGGCAGCATCTACAAATGAGCGTCAGTACACATGTGATATCTGTGGAGCATGTTTTAGTCTTGCTGGTGAGCTAAAGAGCCACAAAAATAACATGCATGGTAAGAACAGCCAGTCCCAACAGACCCATAGCCATCAGAAATGTTGTGATTCATGTGGTGTAGAACTTAACTGCCAGCATCATAATGATGCTGGCAAAGGCAAGAAGGGTAGTGGGAAGTTTGTGAAGTGTGAGAGTTGTCAGGAGATGAATGCCGCAGCGGCAAATGCTGGGAATGCAGGAGCCACTGCAGCAAGTTTCACTGGAGGTGGTGGGGCTAGTGGCACTGAGGGAAATGCAGGTGGTAACATGGCAGGAGGTACGGCAGGGGGGAGCATAAAACCAGGTCACCATCCAGTTAAACGTCGTGGAGTTGCTAGTGTTACAAAATGCCATAAATGTAATGGGTCTGGAATCATATTCATTGGTGGTTCAAGGAGTAACACTGCTGGTATTGATAAACCTTTCCATTGTAATGTGTGCGATGGGACATTCTCTAGGTATAGCAGCTTATGGAGTCACAAACGCCTCCACTCGGGTGATAAACCATTCAAATGCGGTACCTGTGGATTGGCATTTGCAAAGGCAGCGTATTTAAAGAACCATTCAAGGGTCCATACAGGTGAAAAACCGTATAAATGCTCTGTCTGTGCGATGCAATTCTCGCAGAGTCCGCACCTTAAAAACCATGAACGGATACACTCAGGTGAGCGACCCTACCAGTGCGAAGTCTGCGATAAGACATTTGCGAGACATTCGACACTTTGGAACCACAGGCGGATACATACAGGTGAGAAACCATACAGGTGTGATGTTTGCGGTTCAGCATTTAACCAGGCTACGCATCTCAAGAATCACGCCAAAGTCCACACAGGAGAAAAACCCCATCGTTGTGACATCTGTGATGTCGGATTCTCTGACCGTTTTGCTCTTAAAAGGCACCGTAGCATACATGAGAAATATGGTAGAACTGGTCCTAACGCCTCAAATAATGCAGCATCTGCTAATCAGAATACTGCAGCAAATGCTGTCAATAATAATGTTGGTACAAATACTCCAACAAATCCTGGGGGTCAGCCCCAGCAGCAGGGGCAGCCATCAACAATTGATGAGCTGTACAAGTGTGAGGTTGGTGGTCCTATAGCGTTCCCTGGGTGTTCAAGGCCTCATGATGAAAAACAATGA
Protein Sequence: MYAADKSKEQEKATNNATASDFPFCYNVNMLQKVHQQNSTAGVPVGGITGDDKGCYRFDVAQPFGYNYALVNQMSLAAAASTATFKCDVCGLVFGHLSLLNHHKRIHNTSNVTTAATQNNQAASTNERQYTCDICGACFSLAGELKSHKNNMHGKNSQSQQTHSHQKCCDSCGVELNCQHHNDAGKGKKGSGKFVKCESCQEMNAAAANAGNAGATAASFTGGGGASGTEGNAGGNMAGGTAGGSIKPGHHPVKRRGVASVTKCHKCNGSGIIFIGGSRSNTAGIDKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCGTCGLAFAKAAYLKNHSRVHTGEKPYKCSVCAMQFSQSPHLKNHERIHSGERPYQCEVCDKTFARHSTLWNHRRIHTGEKPYRCDVCGSAFNQATHLKNHAKVHTGEKPHRCDICDVGFSDRFALKRHRSIHEKYGRTGPNASNNAASANQNTAANAVNNNVGTNTPTNPGGQPQQQGQPSTIDELYKCEVGGPIAFPGCSRPHDEKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00210213;
90% Identity: iTF_00210213;
80% Identity: -