Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01000357.1:364479-365441[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.9e-06 9e-05 22.2 0.3 1 23 44 66 44 66 0.98

2 9 0.0011 0.052 13.5 4.1 1 23 72 94 72 94 0.98

3 9 0.0013 0.064 13.2 7.8 1 23 100 122 100 122 0.98

4 9 5e-06 0.00024 20.9 4.8 1 23 128 150 128 150 0.98

5 9 2.1e-06 0.0001 22.1 1.5 1 23 156 178 156 178 0.97

6 9 2.8e-06 0.00014 21.6 3.9 1 23 184 206 184 206 0.98

7 9 3.8e-06 0.00018 21.3 1.2 1 23 240 262 240 262 0.99

8 9 3e-06 0.00014 21.6 0.3 1 23 268 290 268 290 0.98

9 9 0.00018 0.0085 16.0 6.0 1 23 296 318 296 318 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.9e-06	9e-05	22.2	0.3	1	23	44	66	44	66	0.98
2	9	0.0011	0.052	13.5	4.1	1	23	72	94	72	94	0.98
3	9	0.0013	0.064	13.2	7.8	1	23	100	122	100	122	0.98
4	9	5e-06	0.00024	20.9	4.8	1	23	128	150	128	150	0.98
5	9	2.1e-06	0.0001	22.1	1.5	1	23	156	178	156	178	0.97
6	9	2.8e-06	0.00014	21.6	3.9	1	23	184	206	184	206	0.98
7	9	3.8e-06	0.00018	21.3	1.2	1	23	240	262	240	262	0.99
8	9	3e-06	0.00014	21.6	0.3	1	23	268	290	268	290	0.98
9	9	0.00018	0.0085	16.0	6.0	1	23	296	318	296	318	0.99

Sequence Information

Coding Sequence: ATGTCTGAACCACAGAATAATTGTGTTAATCCAGAAGTGTGTGTAAATGATGTACAGTACCCTCATGATATTGGTGACAACTCGGTTACTGAGGACACCAGTGCAACAAAACGTAGAACCAAGAGTTCTTACATGTGCGACGTGTGTAAGAAACCCTTCATATATCAAAGCACATTGAAGATTCATTTACTTGTTCATACTGGGGAGCGTCCCTATTCTTGTGATCTGTGTAAGAAAAGATTTAGATTGCGCAGTGGCTTGAAATGTCATTTACGCATTCATACTGGTGAGCGACCTTATTCTTGTGACGTGTGTAACAAAAGATTCACACAGCGCTGTAGCTTGAATTGTCATCTACGCAAACATACTGGTGAGCGACCTTATTCTTGTGACATGTGTAAGAAAAGATTCACACAGCGCTGTAGCTTGAAAGAACATCTACGTGTTCATACTGGGGTATGCCCTTTTACTTGCAGTATATGTAAGAAATCATTCAGATCTAAAATTTACTTGAATGCGCATAGTAATATACATAGTGGCAAGCGTCTGTTTTCATGTGATGTGTGCAAGAAATCTTTCACATTTCAGTCTGGTTTGAGGCAACATCTTCATACTCATACTGGGGAACGTCACTTTTCCTGTCATGTTAGTGGGAAATCATTCAGGCTGAGAGCCAACTTGAGGTGTCATCTGTGTACTCAGAGTGGGGAGTGTTCTTTTACATGTGATTTATGTAAGGGATCATTTCGGGGTAAAGGTGACTTGAAGAAACATCTACGCACTCACAGTGGTGAACGTCCTTTCCCTTGTAATTTGTGTACCAAATCATTCGCAGAGATATCTATGTTGACATGGCATCTACGCACTCATACTGGGGAGTGTCCTTTTACTTGTGATTTATGTAAGAATTCGTTTAGACTAAAACATCACCTGGCAAGGCATCTACAAACTCATACTGGTTAG
Protein Sequence: MSEPQNNCVNPEVCVNDVQYPHDIGDNSVTEDTSATKRRTKSSYMCDVCKKPFIYQSTLKIHLLVHTGERPYSCDLCKKRFRLRSGLKCHLRIHTGERPYSCDVCNKRFTQRCSLNCHLRKHTGERPYSCDMCKKRFTQRCSLKEHLRVHTGVCPFTCSICKKSFRSKIYLNAHSNIHSGKRLFSCDVCKKSFTFQSGLRQHLHTHTGERHFSCHVSGKSFRLRANLRCHLCTQSGECSFTCDLCKGSFRGKGDLKKHLRTHSGERPFPCNLCTKSFAEISMLTWHLRTHTGECPFTCDLCKNSFRLKHHLARHLQTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -