Cfor011457.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000468.1:3747560-3759880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.14 6.9 6.9 0.2 3 20 245 262 244 266 0.88 2 15 0.36 18 5.6 0.3 2 23 273 295 272 295 0.90 3 15 0.00028 0.014 15.4 2.6 1 23 349 371 349 371 0.97 4 15 0.092 4.4 7.5 6.6 2 23 377 398 376 398 0.96 5 15 0.0082 0.4 10.8 2.0 1 21 407 427 407 428 0.96 6 15 1.5e-05 0.00071 19.4 1.4 1 23 434 456 434 456 0.98 7 15 0.063 3 8.0 0.5 5 23 466 484 464 484 0.97 8 15 0.0042 0.2 11.7 2.5 2 23 491 512 490 512 0.96 9 15 6.1e-06 0.0003 20.6 2.3 1 23 520 542 520 542 0.98 10 15 0.00071 0.034 14.1 2.8 1 23 548 570 548 570 0.96 11 15 0.0018 0.085 12.9 2.5 1 23 578 601 578 601 0.94 12 15 0.0026 0.13 12.3 0.4 3 23 622 642 620 642 0.96 13 15 8.2e-06 0.0004 20.2 0.9 1 23 648 670 648 670 0.98 14 15 3.8e-05 0.0019 18.1 0.7 1 23 676 698 676 698 0.96 15 15 3.8e-06 0.00018 21.3 0.5 1 23 704 726 704 726 0.97
Sequence Information
- Coding Sequence
- ATGGCCGTGGATTTAGCAAGTGCATTACCAGCTGTATACTCCACCGTTTCTTCAGAAACTGATGTCACCTCCTTCTGTCGAATATGTGCAACCACAGGCTCTGGTAACTTGTTCTCAATCTTCAGCCAGGAAGGTGAATTGTGGGATGTGGCTGAGAAGATTGGACGGTGTTTGCCAATTATTGTACTTCCAACAGATACCCTACCATTAAATATCTGTATCCAATGTTTGATGAAACTCAACACAAGCTATGAATTGGTGATTACAGCTCTTAATTCAGAAGCTAAGCTGAAAGCAAGATTGGATTTTACTGAAGATCCTATCCAGCTGGAGGCACCTGAAGGTGACCATTTAACTCGAGTGTTTGTGAAGCAAGAGGAGCCTGGCACTGAAGTGAAACCGGATTTGTTGGACACTGTTGAGTTACCAGGTATATATGGATGTGAAGTTGTGATATCCAGTGAAACTGGAAATAATGAGAAGGCAGAAGTGACAGATTCTATGATGACAGAGGTTACTCCTGACACTTTGCgagcacaaaataaaatttcagaaaggtCAGGTGGAAATGCAGAATCAGTAAGACTTCAAGAAGAGTGTCATAAATCCAGAGTAGAGTTTGATATTGAAAGAAGTAATGAAGAGTTACTTAAAAACAGTTACAGTGAGACCAGTGATGGCAAGCTGATGTCTGTGGAAGTACCATCCCTCACAATATATGGACCTGCAATGTGTGACCTATGTAATGTGACATTTACTGATATGGATGAGTTTGACAGTCATGTTGTAGATCGGCATCTTCAGAAACATAAATGGCAATGTCTCCGTTGTGACGACAGCTTTGAGCATCCACAAGATCTTGTGCTGCACAAGGTAGTGACTCATGGCGAAGAACCAGTCTCTTGTGGGCGATGTCAGGAAGGGagaataaaagacaaaaatattgtgaatgAAGGGATTCAGGAAGGGTGGCCTGAGGAAAGTGAAACTCACGGTGGTGAAAGCAAAATTTATGCTAACAACAACAGCAAAGACAGTAcagaattttactgtaaattgTGTGATAGGAATTTTTGTGATGAAGCAAAGTTGAAGGATCACTACCTGGTTCACTCACCGCAGCCACTGGTGTGCAGCAGATGTGGTCTAAAATGTTGCTCATCACATGAGTTGTCTGTTCATAAGAGGAACCACTTGCGAAATGTTAAAGAAGAACGATACATATGTGATGTATGCAGGAAGACATTTTTTGATCATGTTATGTATAACGCCCATCGCAGGCACTGTGGCAGCAAGCGTtacatgtgtaatttgtgtGACCGCACCTTCTGGCGTAAATACagcctccagctgcatatgaaGGTTCATAACCAAGAACAGAGAGAATATGAGTGCGACTGTggacagaagtttgatgcataCAGCAAATTTGAAGCTCACAAGAAGACACATCAAAGAGTAACCACAATGAAATGTGTTACTTGTCGGAAGGTGTTTACAAATGAGACATTTTACAAGAGGCACAGATACATACATGATCCAGAATATTGGGATCGTTTTAAGTGCCAGACATGCCAGCGGCCGTTCAGAGATGCTCATGCACTGAAGAACCATATGCAACTGCATGATGGCATAAAACCTCACATGTGTGATCTTTGTGGGCGTACGTACAATAGGTTTGCGAATATGTTGAAGCATCGCAAACTGCATAAGCCCCAGAATCTATGGGAACATAACTGCACTCACTGTGAGGCAAAGTTTGAACGTTTGAAGGACTTGATGTCCCATATGGAGCAAGCACACATGGCTGGTGACCCAACTGCAGAAGATGCAGAAGGCAAGAAGTCATCGTTGAAGTGGATATGTCGTTTCTGCGGAAAACGTATCTCTACAAAGCTCAGTCTTCAGGATCACGAACGTATTCATACAGGTGCCAAACCTTATATTTGTGAGTGGTGTGGACGTGAATTTCGTTCCCGCCCAAACCTCTTGCAACATCATCTTACCCACACAGGTGATCGGAAACATGCTTGTGCAGTATGTGGCAAAAGATTTGGACGAAAGTCGTTCATCGCTCAGCATATGAGGGTGCATACAGGTGAAAAGCCGTTTGAATGTGATCTTTGTGGCAAACGTTTCACACAGGCTGGGGATATGAGACGACATCGTGGTCGCCATATTGAGCAACAGAAGGAACAGGTTGCATTATTTGTAGAAATTCAGCAATAA
- Protein Sequence
- MAVDLASALPAVYSTVSSETDVTSFCRICATTGSGNLFSIFSQEGELWDVAEKIGRCLPIIVLPTDTLPLNICIQCLMKLNTSYELVITALNSEAKLKARLDFTEDPIQLEAPEGDHLTRVFVKQEEPGTEVKPDLLDTVELPGIYGCEVVISSETGNNEKAEVTDSMMTEVTPDTLRAQNKISERSGGNAESVRLQEECHKSRVEFDIERSNEELLKNSYSETSDGKLMSVEVPSLTIYGPAMCDLCNVTFTDMDEFDSHVVDRHLQKHKWQCLRCDDSFEHPQDLVLHKVVTHGEEPVSCGRCQEGRIKDKNIVNEGIQEGWPEESETHGGESKIYANNNSKDSTEFYCKLCDRNFCDEAKLKDHYLVHSPQPLVCSRCGLKCCSSHELSVHKRNHLRNVKEERYICDVCRKTFFDHVMYNAHRRHCGSKRYMCNLCDRTFWRKYSLQLHMKVHNQEQREYECDCGQKFDAYSKFEAHKKTHQRVTTMKCVTCRKVFTNETFYKRHRYIHDPEYWDRFKCQTCQRPFRDAHALKNHMQLHDGIKPHMCDLCGRTYNRFANMLKHRKLHKPQNLWEHNCTHCEAKFERLKDLMSHMEQAHMAGDPTAEDAEGKKSSLKWICRFCGKRISTKLSLQDHERIHTGAKPYICEWCGREFRSRPNLLQHHLTHTGDRKHACAVCGKRFGRKSFIAQHMRVHTGEKPFECDLCGKRFTQAGDMRRHRGRHIEQQKEQVALFVEIQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289180;
- 90% Identity
- iTF_01289180;
- 80% Identity
- -