Cfor011724.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000407.1:843284-857714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00098 0.047 13.7 4.6 1 23 110 132 110 132 0.95 2 10 3.3e-06 0.00016 21.4 1.3 1 23 137 159 137 159 0.98 3 10 0.00044 0.021 14.7 0.3 1 23 165 187 165 187 0.92 4 10 0.019 0.89 9.6 7.8 1 23 193 215 193 215 0.92 5 10 2e-07 9.7e-06 25.3 0.9 1 23 221 243 221 243 0.97 6 10 1.2e-05 0.00058 19.7 1.4 1 23 249 271 249 271 0.97 7 10 5.4e-07 2.6e-05 23.9 1.9 1 23 277 299 277 299 0.98 8 10 4.4e-06 0.00021 21.1 0.3 1 23 305 327 305 327 0.98 9 10 0.00048 0.023 14.6 1.4 1 23 333 355 333 355 0.97 10 10 5.8e-05 0.0028 17.5 0.2 1 22 361 382 361 383 0.92
Sequence Information
- Coding Sequence
- ATGGACGCGATAAAGGTGGAGCCTGATTCGGACGGCGAAACAAGTGAATCGCATGTAAATGACCAGGAAAGTGACTGCCAAGAAGATGGAGTACGCCAACCATTCGCTTTTGCTGAAGTGAAGGTAGAAGTTGAGCTTGATCCCCAGGAACTTGTAGAAGTGAAAGTAGAACCAGATATTGAAGTAAAGTGTGAGGACCAGAAGGCTGATGCAGATATTGAAGGAAACTTTGAGGACCAGAAGGCTGATACAGATAGAGACAGTTCACAGGACTTCTCAAGTCATTATGCTGAGGCTGCTATAGGGAACTGTTCAAGTGAGTGGCCACATAAGTGTTCAGAATGTGGAAAGTGTTTCCCAACGTTTGCTGGTGTGCAGAAACATTCATATAAGCATAAACCCAAGACATTTTCGTGTGATATTTGTGGCCAGAGCTTCTATCATCCCAACTTATTGAAGACACACAGGCTGGTACACACAGATGGGAAACcttatttatgtgaaatatgtggCAGACGGTTCCTGCAGGCCTCTAATTTAAGATTACATTCTGTAAAGCACAAGGGAGAGAAGAGTCATGAGTGTAAAATGTGCAAAAAGAGATTTTTCCATGCAGATACTCTGAAAACTCATTGTATGATTCACAGCGGCATTAGACCTCATGTCTGTGAAGTTTGTAATCGGAGATTTACTCAAGCTGGTAATCTCAAAACGCACATGTTGGTACATACAAGGGAAAAACCATTTCAGTGTACAGAGTGTGGTAAGGGTTTTGCCTTACGCCATGCATTAAAAAGTCATCAGACCCTCCACACTGGAGAAAAGCCATACAAGTGTGATGTGTGCGGTAAGGAGTTTCGACATCGTCAGGCACTTATCAATCATCAGAAACTTCACACAGGAGACAAACCCTATGAGTGTGATATATGCCTGAAAAGATTTTCATTGCGTGGCAATCTTCAGAAGCACATTGTTATGCACATGAGTGAGAAACCCTACAACTGTACTTTTTGCTCGAAAAGATACTCGGACACACAGTCTCTGAAGGAACATGTTGCATCTCATGTAAATAATAAGCATTATAAATGTGGTGAGTGTAACAAGCAGTTTCCAAATCTGGAGGCATTGGAAAAACATTCTGATGACCACAAAGGGGAGATTGTTGTTGGCTTTTAA
- Protein Sequence
- MDAIKVEPDSDGETSESHVNDQESDCQEDGVRQPFAFAEVKVEVELDPQELVEVKVEPDIEVKCEDQKADADIEGNFEDQKADTDRDSSQDFSSHYAEAAIGNCSSEWPHKCSECGKCFPTFAGVQKHSYKHKPKTFSCDICGQSFYHPNLLKTHRLVHTDGKPYLCEICGRRFLQASNLRLHSVKHKGEKSHECKMCKKRFFHADTLKTHCMIHSGIRPHVCEVCNRRFTQAGNLKTHMLVHTREKPFQCTECGKGFALRHALKSHQTLHTGEKPYKCDVCGKEFRHRQALINHQKLHTGDKPYECDICLKRFSLRGNLQKHIVMHMSEKPYNCTFCSKRYSDTQSLKEHVASHVNNKHYKCGECNKQFPNLEALEKHSDDHKGEIVVGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396617;
- 90% Identity
- -
- 80% Identity
- -