Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01009743.1:388746-415217[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0096 0.46 10.5 2.0 1 23 520 542 520 542 0.75

2 18 0.12 6 7.1 2.2 1 19 548 566 548 570 0.87

3 18 0.0025 0.12 12.4 0.7 3 20 588 605 586 607 0.93

4 18 0.13 6.1 7.0 2.2 1 23 614 636 614 636 0.95

5 18 0.0016 0.078 13.0 0.8 3 23 644 665 643 665 0.96

6 18 2.6e-05 0.0013 18.6 1.9 1 23 671 693 671 693 0.97

7 18 1.9e-05 0.0009 19.1 0.5 1 23 699 721 699 721 0.98

8 18 0.0003 0.015 15.3 5.4 1 23 727 749 727 750 0.96

9 18 5.4e-05 0.0026 17.6 1.6 1 23 765 787 765 787 0.97

10 18 0.00038 0.019 14.9 1.0 1 23 804 827 804 827 0.95

11 18 0.0025 0.12 12.4 0.6 1 23 833 855 833 855 0.99

12 18 0.0017 0.08 12.9 0.1 1 23 880 902 880 902 0.97

13 18 7.1e-06 0.00034 20.4 0.9 1 23 908 930 908 930 0.98

14 18 3e-06 0.00014 21.6 0.5 1 23 936 958 936 958 0.96

15 18 0.0015 0.071 13.1 1.6 1 23 964 986 964 986 0.97

16 18 2 98 3.2 3.0 1 23 992 1014 992 1014 0.95

17 18 1.1e-06 5.3e-05 22.9 0.9 1 23 1020 1042 1020 1042 0.98

18 18 0.00011 0.0053 16.7 0.5 3 23 1050 1070 1049 1070 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0096	0.46	10.5	2.0	1	23	520	542	520	542	0.75
2	18	0.12	6	7.1	2.2	1	19	548	566	548	570	0.87
3	18	0.0025	0.12	12.4	0.7	3	20	588	605	586	607	0.93
4	18	0.13	6.1	7.0	2.2	1	23	614	636	614	636	0.95
5	18	0.0016	0.078	13.0	0.8	3	23	644	665	643	665	0.96
6	18	2.6e-05	0.0013	18.6	1.9	1	23	671	693	671	693	0.97
7	18	1.9e-05	0.0009	19.1	0.5	1	23	699	721	699	721	0.98
8	18	0.0003	0.015	15.3	5.4	1	23	727	749	727	750	0.96
9	18	5.4e-05	0.0026	17.6	1.6	1	23	765	787	765	787	0.97
10	18	0.00038	0.019	14.9	1.0	1	23	804	827	804	827	0.95
11	18	0.0025	0.12	12.4	0.6	1	23	833	855	833	855	0.99
12	18	0.0017	0.08	12.9	0.1	1	23	880	902	880	902	0.97
13	18	7.1e-06	0.00034	20.4	0.9	1	23	908	930	908	930	0.98
14	18	3e-06	0.00014	21.6	0.5	1	23	936	958	936	958	0.96
15	18	0.0015	0.071	13.1	1.6	1	23	964	986	964	986	0.97
16	18	2	98	3.2	3.0	1	23	992	1014	992	1014	0.95
17	18	1.1e-06	5.3e-05	22.9	0.9	1	23	1020	1042	1020	1042	0.98
18	18	0.00011	0.0053	16.7	0.5	3	23	1050	1070	1049	1070	0.95

Sequence Information

Coding Sequence: ATGGATAAGGCTacaaatgttatgaaaatagttCTGAAAAATTCTTCTGGAGAATCCTTTACTGTAAGCATACATCCAGATGATACAATTCAGGATTTGAAGAACAGAATACACAGTGAAGCTGGAatacacatagattttaatCAGACAAACAGCAACGGGCAGAAAGTCACAGATGATCAAAATGTGGTGGATTATATATCACATGGTTTAAACTCAAGTCTGGCCGTTGGATTTGCCAAGAATGAGGGGAGTGATAATGCACCTCAACTGACATGCATTGTACCGGGCTGTGCCAGCACCAAACTAGCTTGTCGTGAAAGAGCGCTGTGCGCTTTGCCAACTTTAAAAGATAAGCGACAACAGTGGCTTCCTCAATGTAAACGTGAAGGTCTCACAGACAATATGGAACTCAGCCTTACAGTGTGTTCTGACCATTTCATTGAGGAGCAGTACATGAACTCATTTAGTAGCAGATTAAAAGAAGATGCTATACCAACCATGTTTCCAGTTGTGCAGCCTTCATTTGACAAAAGCTGTATGTTCAATACAAAAGAACATGAACCAGTTCTTACAGATAATTGTGAAGCTATCATTAAAACAGAGTCAGATACCGATAGCAATCTGGATGTTTTTACTGGTGAGGATAAATGTGCTGCTTTAGAACACCCAGGACAGTTGTGTCGGCTTTGTGCCACCAGTACACTAGATGTCATCTACATCTTTAGCTCAACTGGCAAGCAGCTCAACATAGCTGACAAAATCAACTCAAGTCTGCCAATTTTGGTGCAGCAAACTGATCCTCTCCCAAAGCAGTTGTGCTCATCTTGTGTTGTGAAACTGAACATGTGCTATGAATTTTCCCAGTCATGCATTGAGGCTGAGGAGAAACTGAAGACCTTGATTAAACTAAAACAGTTCTGGTCCCAGTTCCCTGATGAGGCAGCATCAGCGTCTGTATGCAGCAGTAATTCTGTTTTCAAGATGGAACCTGATTCACAAGTGAAGGCCGAAAGCTTGCAGTTTAAACGTGAAAATTTCAAACCCTGCAGTTCTTCAGATACTTGGAATGACAGTAGACATGCAGAGCTGGATGTTACTGGCCAGAGTAAGGATTCTTATTGCTGCCCACTCTGCTGTGAAGGAAAAATGAAGATATGTAGTAAAGAAGGGGAGACATCTACAGTGGTGACagaaacagataaaaaaatTGATAAACCTCCTGCAGGTGGCAAACAGCCTTCGGACTTGGTCAACGGGTCAGACAGTTTCAAAGACAGAGATTTGTCAGAGATAGCTGGCACCAACGTTGATGATATTAaccatttacaaaataatgtcgTATATGAAGTGAGagatgaagaaggaaataacTACACTTTTGTAGAAAGCAGTGTTGGATGGTGGAATGGTGAAAGTACTTTAGAAAGTGCAGAAATTATAATAGAGACATTAAATTCAGAAGATGCTGATGTTCTTGATGAGGTAGGACATGAAGATGAAGTCACAGTTAACAGCTGGAATTTAGCAGGCCAAGTAGAAGTGGAAAACAGCACTTTCACATGTCAGGTTTGTGGGGAGTCATTCCCATCTGAGGAACTTTGTTTACACCACTCCAGAATTCATAATGAGGAAGGGTTTTACCCTTGCAGTCTTTGTGGGATGTGCTTCAGTAATGAACTAGACATCACAAGTCACTGTGAGGAACATAAGGCAgaggaaaagaaagtaaaaagtaaacTTTCCAAAGGTCGTGTTATATGTAGCATGTGTGGTAGGAGGTTTAACAGTGAGAAAACGCTGAATGAACATACATGTGGAAGCAATGAGACCAAACAGTTTCGATGTGAGATGTGTAAGAAAGCATACATATCTGAAGAAAGGCTGAGATTTCATCGCAGGTTTCATGAAGGTGCCAGACCAAATCACTGTGTTCAATGTGGGAAGGAATTTGATAATGAAGGAAGCTTATATTACCATACACGGATGGTCCATGAAGGTGCCCGGCCATTCTGCTGTGAAGAATGTGGCAAACGGTTCTACTCCAATGCAAGATTAGAAGCACACAAGCGTGTTCATTCTGGGGAGCGACCTTTTGAATGTGAAGTATGTGGGCGACGTTTCTATGATCGAGAAACACTCAAGGGGCACTACATCACACATATGTCAGTAAAACCTTTTCAGTGTgatttgtgtggtgtgtgttgtggCAGAAAGAGCATGCTGAAGCAACATGTGCGTATCCACCATTCTGATACTTACATGCCAAAACGTGTGCCATCCCTTATTCACTATTTCTGTAAAATCTGTAATGAAACATTCACCAGCTCATCAGATGTTTTAACTCACAGGACTACTCACTGGGGAACACTACAGAATTTAAATAGTATGAATAAGGAGCCCGAACCTCATGTGTGTGAATATTGTGGAAAAGCTTTCTCGATGGTAAACTCACTTGGTAAACACCGGAAGCAGGAACACCCTGATGAACAGCCTTATGTATGTAGTATCTGTAGAGAGACTTCTCGAACACTGTATGAAGCCAGAGCTCACCGGAAAACCCACACATCAGCTGAAGAACTagacaataaagaaaaaataaagccAAGTCCAGATAAAGTAGTGACACAGAAGGTATTTATATGTGAAGAATGTGGTAAGCCTTTACCTGGTCGACGCAAGTTCATGGCACATATGAAAGCTCATCGCATGGACTTACCATTTGAGTGTACAGTATGTGGAAAAAAGTTCACTGAGAAGCAGCGTCTTCTTGTTCACATGCGTTTACACACTGGTGAGAAGCCTTATTCATGCAGTGAGTGTGGAAAGCGATTCACTCAGTCATCTGCCCTCTACACTCATGCTCTGCTTCATACAGGTGAGAAACCCCACTCTTGTGACCTCTGTGGTAAAGCCTTTCGCATCAAAGCAGACCGAGACAATCACCGACGCACACATACTGGTGAAAAGCCATACCATTGTGAGTTCTGTGCAAAACAGTTTCGAACAGGTCAAGTGTACTATCAGCATCGCATGATACACACTGGTGAGCGACGTTTtccctgtgatgtgtgtgggaAAGCTTTCAAACGTTCACATACACTTGTTGTTCATAAACGAATTCATACAGGTGAGAAACCTAACATCTGTGACATTTGTGGCAGGGGATTTCGCCAAAGAACAGATATGAAGAAACACAGGGCTCTACATTCAGCATAA
Protein Sequence: MDKATNVMKIVLKNSSGESFTVSIHPDDTIQDLKNRIHSEAGIHIDFNQTNSNGQKVTDDQNVVDYISHGLNSSLAVGFAKNEGSDNAPQLTCIVPGCASTKLACRERALCALPTLKDKRQQWLPQCKREGLTDNMELSLTVCSDHFIEEQYMNSFSSRLKEDAIPTMFPVVQPSFDKSCMFNTKEHEPVLTDNCEAIIKTESDTDSNLDVFTGEDKCAALEHPGQLCRLCATSTLDVIYIFSSTGKQLNIADKINSSLPILVQQTDPLPKQLCSSCVVKLNMCYEFSQSCIEAEEKLKTLIKLKQFWSQFPDEAASASVCSSNSVFKMEPDSQVKAESLQFKRENFKPCSSSDTWNDSRHAELDVTGQSKDSYCCPLCCEGKMKICSKEGETSTVVTETDKKIDKPPAGGKQPSDLVNGSDSFKDRDLSEIAGTNVDDINHLQNNVVYEVRDEEGNNYTFVESSVGWWNGESTLESAEIIIETLNSEDADVLDEVGHEDEVTVNSWNLAGQVEVENSTFTCQVCGESFPSEELCLHHSRIHNEEGFYPCSLCGMCFSNELDITSHCEEHKAEEKKVKSKLSKGRVICSMCGRRFNSEKTLNEHTCGSNETKQFRCEMCKKAYISEERLRFHRRFHEGARPNHCVQCGKEFDNEGSLYYHTRMVHEGARPFCCEECGKRFYSNARLEAHKRVHSGERPFECEVCGRRFYDRETLKGHYITHMSVKPFQCDLCGVCCGRKSMLKQHVRIHHSDTYMPKRVPSLIHYFCKICNETFTSSSDVLTHRTTHWGTLQNLNSMNKEPEPHVCEYCGKAFSMVNSLGKHRKQEHPDEQPYVCSICRETSRTLYEARAHRKTHTSAEELDNKEKIKPSPDKVVTQKVFICEECGKPLPGRRKFMAHMKAHRMDLPFECTVCGKKFTEKQRLLVHMRLHTGEKPYSCSECGKRFTQSSALYTHALLHTGEKPHSCDLCGKAFRIKADRDNHRRTHTGEKPYHCEFCAKQFRTGQVYYQHRMIHTGERRFPCDVCGKAFKRSHTLVVHKRIHTGEKPNICDICGRGFRQRTDMKKHRALHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -