Cfor004258.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000370.1:221763-277571[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4e-06 0.00019 21.2 1.9 1 23 208 230 208 230 0.98 2 15 4.8e-05 0.0023 17.8 0.3 1 23 236 259 236 259 0.97 3 15 4.1e-06 0.0002 21.1 0.0 3 23 269 289 267 289 0.96 4 15 1.1e-05 0.00052 19.8 0.6 1 23 295 317 295 317 0.98 5 15 0.0011 0.053 13.5 4.7 1 23 323 345 323 345 0.96 6 15 2.2e-05 0.0011 18.8 0.2 3 23 352 372 350 372 0.98 7 15 1.6e-05 0.00075 19.3 1.4 1 23 378 400 378 400 0.98 8 15 0.001 0.05 13.6 8.6 1 21 406 426 406 428 0.96 9 15 0.02 0.95 9.6 0.1 2 23 466 487 465 487 0.93 10 15 2.6e-06 0.00012 21.8 1.6 1 23 499 521 499 521 0.99 11 15 0.0056 0.27 11.3 1.6 3 23 529 549 527 549 0.94 12 15 6.6e-07 3.2e-05 23.6 0.7 1 23 555 577 555 577 0.98 13 15 4e-07 2e-05 24.3 2.1 1 23 588 610 588 610 0.97 14 15 0.00026 0.013 15.5 5.7 1 23 616 638 616 638 0.98 15 15 0.0097 0.47 10.5 4.9 1 23 644 667 644 667 0.98
Sequence Information
- Coding Sequence
- ATGGCTACCGATTGGAGTGAAGTTGCACAAGAATTGTTGAACTTTTTTCCGAGATTTCTGTCATTCTTGAAAGATGCTGGGATGCTGCATTCATACTCATTTTCTCACTCAGATGTCAGTGCCATATTGGAGACACATAAGAAGGAGGAATTCCTGTCAAGACTGATTTCATTTCTGGAATATCTGAAGTCAAGTCTTCAGCGATTTAAAGCACTTCAGCCTAGCACAAAGAATGCTGATACAAATGTAATAACTTTTGAGACGGAACTCAAAGAAAATATTGATTGGCCTCTGGGTAAAGAAATTGGAggtgaaataaatactgtaagtCTTGATGAGAAGAGCCACACCAGCTGGTCTGAATTTGGAGGCCATAGCCATGACAGTTTCCAGAGTCACACTGAagatgataaaaataaagatgGTAACAGTCTTGATGATCTTAATGATCCCAGCAGATCACATTTGTCGAAGCTTGGCATGGTGGTTATTGATAGTACACATGGTGAAAACCTCAAAGACctttacactaaaaattcttCCTCAGAAGCAAATAAGGCAGATGatacaaatgtttcaaaagatAAGTCTATAAAATTTGTGCAGCTACATGATGGGAAGTATTGCTGTCCTGTCTGTGACAAAATGTTCAGTACAACATCAGCCATTGTTCGACACTACAGAACACATACTGGGGAGAGACCCTTTTCTTGTGACTTCTGCAACAAGACGTTCGCGTCTAAAGCCAGTGTTGAAGCACATCTCCTGCGAGAACACAACCTGAATACCGAGTCTGCACTGGCTTGCCCGGAGTGTGGCAAGCTGTTTGTACGTCGCAGTGCTCTTGAAGTTCACTTGATAACTCACAGCAAAGACAAGCCTTTCCAATGTGATGTCTGTGGAAAGACATTTTCACAGAAAGTTACTAGAAATATCCACTTGGCCAGGCATACAGGAAGGTATGATCACAACTGTAATGTGTGTCGCAAGAAGTTTGCTTCACGTGCAAAACTCAACGAACATATGCACCAACATCGAAGTCCACGGTTCGGATGTGACGTGTGTGGGCGGCAGTATGTACGCCAGGATGCACTTCGTACACATCGAAGGATTCACACAGGGGAGCGACCTTTTCAGTGTCCACTCTGCAAAAAATCTTTCTACATGCTATCCAGCCTTCGTCTTCATGAGCAGACACACAATGAAGTAGCTGGGTTCAAGTGCCATCAGTGTGGGTCAAAGTTCAAACATAAGTCAAGTCTTTCTGCACACATGAAATGTCATGCAAGTTCAGGACTGTTGTCATGTCCAGTGATTGGCTGCAGAAGAGCAGAGGTTGGATTTCTCCTAGCCCGCAGTTTACAGAATCATGTACTCAGTCACCGTCAGCAGTTTCTTTGTGCCAGTTGTGGCCGTGTGTTTGGAAGCAAACCGGGTCTTCTGGAGCATGAGAAACTTCACAGCAAACAATTAACAGTGGAGGAATCTAAGCCTTATTCTTGTCATCTCTGCCCAAGGAGATTTGCACGTAATGGAAAGCTGAGTGCACACATCAAAACACACCTTCAGGAACCAGGCTATGGATGTAACATTTGTGGAAAACGTTTCCATCGTAAGGATGTTCAAGCAAATCACATGTTCCTGCATTCAGGACAGAGACCATTCAGTTGTGCACATTGTGGTAAAGCTTTTGCATTCAAGTCAAATTTGAGTGCCCATCTCGCCACACACCCAAGTGATGCTGGTCATCAACAGGTTGAGTTTCCTTGCCCTGAATGTGGCAAGAAATTTCGGCATCGGAGTTCCCTCACCCTGCACAGGAAGGCTCATAGTGGCCAGTATAACCATACCTGTGCTACCTGTGGGAAAAACTTCATGAAGAAGAGTCATTATGAGAGTCATTTGCGTAGCCATGCAACTGAACGTCCGTTTCAGTGTCCAACCTGTGGTAAGGGTTATAAAGAACGCAAACATTGTCGTGAACATGTTCGAAGGCTACATCCAAATGACTTCAATTTGGAAACCTTGTTTGCTTCCATCACAAGTGAAGATGCTCAGGTAGCAGATATGCTTTATTCTGAGCAGGCGGTGACAACACTGCACATACAGAACCCTACTGATCAACATTCTTCCAGTCTTCACCAACAGAATTCAGATCCACATCCAACATCATCTGATCTCCATTCAGATTTCATGCTGGAACAGCAGTCTGCCTCTGCTCTTTCACAGGCACCTCCTGTGCCCTCTCCTGGCCTGCATCTGTTTCCAACTGTAGCACTGGCAAATCTTGACcccattttacatgaaatagGTCAGATGCACACCCAACCAACCCAATTCTTGATCTCTGAAGTGGATGAAAGACAGGGCTTAACAACAGCGGAGAGTGTGGAACACATTATGCAGTGCCAAACAGTAGTTCAGAATGCTGGTACCACAACACTGGCAGTTTTGTCAAGTGAAGATACAACATCAGTATTATCGCAAGGGCTGAAACCATAA
- Protein Sequence
- MATDWSEVAQELLNFFPRFLSFLKDAGMLHSYSFSHSDVSAILETHKKEEFLSRLISFLEYLKSSLQRFKALQPSTKNADTNVITFETELKENIDWPLGKEIGGEINTVSLDEKSHTSWSEFGGHSHDSFQSHTEDDKNKDGNSLDDLNDPSRSHLSKLGMVVIDSTHGENLKDLYTKNSSSEANKADDTNVSKDKSIKFVQLHDGKYCCPVCDKMFSTTSAIVRHYRTHTGERPFSCDFCNKTFASKASVEAHLLREHNLNTESALACPECGKLFVRRSALEVHLITHSKDKPFQCDVCGKTFSQKVTRNIHLARHTGRYDHNCNVCRKKFASRAKLNEHMHQHRSPRFGCDVCGRQYVRQDALRTHRRIHTGERPFQCPLCKKSFYMLSSLRLHEQTHNEVAGFKCHQCGSKFKHKSSLSAHMKCHASSGLLSCPVIGCRRAEVGFLLARSLQNHVLSHRQQFLCASCGRVFGSKPGLLEHEKLHSKQLTVEESKPYSCHLCPRRFARNGKLSAHIKTHLQEPGYGCNICGKRFHRKDVQANHMFLHSGQRPFSCAHCGKAFAFKSNLSAHLATHPSDAGHQQVEFPCPECGKKFRHRSSLTLHRKAHSGQYNHTCATCGKNFMKKSHYESHLRSHATERPFQCPTCGKGYKERKHCREHVRRLHPNDFNLETLFASITSEDAQVADMLYSEQAVTTLHIQNPTDQHSSSLHQQNSDPHPTSSDLHSDFMLEQQSASALSQAPPVPSPGLHLFPTVALANLDPILHEIGQMHTQPTQFLISEVDERQGLTTAESVEHIMQCQTVVQNAGTTTLAVLSSEDTTSVLSQGLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -