Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01000450.1:893874-905145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-07 1.2e-05 24.9 0.8 1 23 74 96 74 96 0.96

2 15 7.2e-06 0.00035 20.4 1.9 1 23 102 124 102 124 0.98

3 15 3.5e-08 1.7e-06 27.6 2.5 1 23 130 152 130 152 0.99

4 15 9e-09 4.3e-07 29.5 3.9 1 23 158 180 158 180 0.99

5 15 1e-05 0.00049 19.9 4.7 1 23 193 215 193 215 0.98

6 15 4.9e-05 0.0024 17.8 6.6 1 23 221 243 221 243 0.98

7 15 6e-09 2.9e-07 30.1 3.0 1 23 249 271 249 271 0.99

8 15 1.4e-05 0.00066 19.5 2.8 1 23 277 299 277 299 0.98

9 15 4.5e-05 0.0022 17.9 3.9 1 23 305 327 305 327 0.98

10 15 2.3e-05 0.0011 18.8 7.5 1 23 333 355 333 355 0.98

11 15 0.00028 0.014 15.4 5.3 1 23 361 383 361 383 0.98

12 15 3.2e-07 1.6e-05 24.6 2.8 1 23 389 411 389 411 0.99

13 15 6.8e-05 0.0033 17.3 8.1 1 23 417 439 417 439 0.97

14 15 2.8e-07 1.3e-05 24.8 2.4 1 23 445 467 445 467 0.98

15 15 0.0049 0.24 11.5 1.0 5 23 474 495 472 495 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-07	1.2e-05	24.9	0.8	1	23	74	96	74	96	0.96
2	15	7.2e-06	0.00035	20.4	1.9	1	23	102	124	102	124	0.98
3	15	3.5e-08	1.7e-06	27.6	2.5	1	23	130	152	130	152	0.99
4	15	9e-09	4.3e-07	29.5	3.9	1	23	158	180	158	180	0.99
5	15	1e-05	0.00049	19.9	4.7	1	23	193	215	193	215	0.98
6	15	4.9e-05	0.0024	17.8	6.6	1	23	221	243	221	243	0.98
7	15	6e-09	2.9e-07	30.1	3.0	1	23	249	271	249	271	0.99
8	15	1.4e-05	0.00066	19.5	2.8	1	23	277	299	277	299	0.98
9	15	4.5e-05	0.0022	17.9	3.9	1	23	305	327	305	327	0.98
10	15	2.3e-05	0.0011	18.8	7.5	1	23	333	355	333	355	0.98
11	15	0.00028	0.014	15.4	5.3	1	23	361	383	361	383	0.98
12	15	3.2e-07	1.6e-05	24.6	2.8	1	23	389	411	389	411	0.99
13	15	6.8e-05	0.0033	17.3	8.1	1	23	417	439	417	439	0.97
14	15	2.8e-07	1.3e-05	24.8	2.4	1	23	445	467	445	467	0.98
15	15	0.0049	0.24	11.5	1.0	5	23	474	495	472	495	0.88

Sequence Information

Coding Sequence: ATGATGGAAGGCATGATGTGCGTGGGTTTGGTGAAAATGGAACCCAGTTCGGGTCGTGAGAGCTGTGTAATGTCTTCTAATTATGAAAGTGAAGTCGTAGATATTAAAGTTGAGGGGGACACACATGTAGAAGTGGTGCAGCAACCTGGACCTATAACATTTTCAACAGTAAAGTCTGAAACTGAGGAATGTGAATGCGTATATATTGGTCAGCAGCCTTACCTctgtaatgtgtgtttgaaGTCATTCCCTCGTGAGAGTAACCTGCGGAGACACCAACGCATACACAGTGTTACGCATCTGTATCACTGTGATGTGTGCCCTAAGTCTTTCCGTCTGAAGATTACGTTGAAGGCACATCAACGCTTACACAGTGGAGAGCGTCCATATCGCTGTGAAGTATGCCGTAAGTCATTCACTCGAAAGAGTACTCTGAAAGTACATCAACGCATACACAGTGGTGAGCGTCCATatcagtgtgatgtgtgtcataAGTCATTCTCTGACAAGAGTAACCTGAGGGAACATCAACGCAGACATAGTGGTGTGCATCCATTAAACAATGTTACGCGTCTGTATCCCTGTGATGTGTGCCATAAGTCATTCCATCAGAAGATTACGTTGAAGACACATCAACGCATACACAGTGGAGAGCGTCCATATTGCTGTGATGTATGCTGTAAGTCATTCACTCGAAAGAGTACTCTGAAGGCACATCAACGCATACACAGTGGTGAACGTCCATatcagtgtgatgtgtgtcataAGTCATTCACTGATAAGAGTAACCTGAGGGAACATCAACGTGTACATAGTGGTGTGCGTCCATTTCACTGCGATGTGTGCAGTAAGTCATTTGGACGGAACACTACTCTTAAGATGCATCTACGCGTACATAATGGTGTGCGTCCGTATCGCTGTGATGTATGCTATAAGTCATTTAGTTATAAGATTACACTGACGACTCATCAACACATACACAGTAGAGAGCGTCCCTATCACTGTGATGTGTGCCGTAAGTCATTCTGTGATAAGAGTGCCCTGAGGAGACACCAGCATGTACATAGTGGTGCGCGTCCGTATAATTGTGATGTGTGCTGTAAGTCATTCAGGTACAAGACCTCCCTGAAGACACATCAACGCATACACAGTGGAGAGCGTCCGTATCAGTGTGATGTGTGCCGTAAGTCATTCTGTGATATGAGCGCCCTGAGGAGACACCAGCGCGTTCATAGCGATGCGCGTCCATATTGCTGTGGTGTGTGCCATAAGTCATTCAGTCACAACACCACTCTGAAGACACATCAACAGATACATAGTGGAGAGCGTCCATatcactgtgatgtgtgtagtaAGACATTCTCGGGTAAGGGTAACCTCACAAGACACCAACGCATACATAGTGGTGCGCGTCCATATCACTGTGGTGTGGGTAGCAAGTCATTCAATCAGAAAGGTCATCTGAAAGAACATACAAACATGCATAGTGGTGAGTGCCCATATCACTGTGATGTATGTACTTAA
Protein Sequence: MMEGMMCVGLVKMEPSSGRESCVMSSNYESEVVDIKVEGDTHVEVVQQPGPITFSTVKSETEECECVYIGQQPYLCNVCLKSFPRESNLRRHQRIHSVTHLYHCDVCPKSFRLKITLKAHQRLHSGERPYRCEVCRKSFTRKSTLKVHQRIHSGERPYQCDVCHKSFSDKSNLREHQRRHSGVHPLNNVTRLYPCDVCHKSFHQKITLKTHQRIHSGERPYCCDVCCKSFTRKSTLKAHQRIHSGERPYQCDVCHKSFTDKSNLREHQRVHSGVRPFHCDVCSKSFGRNTTLKMHLRVHNGVRPYRCDVCYKSFSYKITLTTHQHIHSRERPYHCDVCRKSFCDKSALRRHQHVHSGARPYNCDVCCKSFRYKTSLKTHQRIHSGERPYQCDVCRKSFCDMSALRRHQRVHSDARPYCCGVCHKSFSHNTTLKTHQQIHSGERPYHCDVCSKTFSGKGNLTRHQRIHSGARPYHCGVGSKSFNQKGHLKEHTNMHSGECPYHCDVCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -