Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.1e-07 0.00014 21.0 0.0 2 39 16 53 15 57 0.89

2 2 2.5 3.2e+03 -2.5 0.1 18 23 97 102 94 103 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.1e-07	0.00014	21.0	0.0	2	39	16	53	15	57	0.89
2	2	2.5	3.2e+03	-2.5	0.1	18	23	97	102	94	103	0.90

Coding Sequence: ATGCCAAGAACGTataaaaggaaaactgaaagggcaaatgttgccccagatacagttcttcgagccgttagggctgtcagaatagaaaacagaTCGATTAGGAGTGTAGCAAGGGAGTTTGGAATCCCATTTCGCTCTctaacgagatattgcagcagagcttctgaGAATGATATAAggggaatttcacagaatccgacgtTCAGTAttgggtacaagaaaactcgccagGAAGCAGCAAACGCACAACCTCAGAAGTCAGGTGACCATGACAGTGGCACGAGAAGCTCTGTACAAAAAGCAGCTGAACCGGCGCCAAAGAGAACTAGAAGAAAGGATTCGGATGTGGGTGAAGATCATGTTAGCATAAGAACTGTCAACACGCAGAATTCACAGCGAGATGAATTTTCGATTTTTGGTGAACATGTGGCATTTAAATTGCGGAATTTAAAAGACAGGCGTTCGCAGTCCATCGCGCAGTTTGAGATCAGTAGCGTTCTGTTTCAAGTAGAGATGGGAAATTTCAGGAACTTAACACATTTCAACACCAGCAGTGTCTCTCCTGCTGGAGTACAACCACCATATTTAGGTACAGTAGCGTCACAAATACCGTCATCAACTAATTATTCCGCCCTGTCTCCTGTAGTTTTGTTGCAGCCTGCTTCTTCGCCAGTGACAGGTTCGGCTTCACCCCCTCCCCAAGTGCCGAAGTTAAGTCCACAGTCACTCCACTCGAATTCTTCGATTGCCGAAGACACCGAAACAAAGTCCGAAAATGATATAGTAACAATGACTTCGACCTCTGACTATACGGAACAACCACCGAAACCTACAGACCACTACATTCTTGCGTgtttccaggcttccgccgcggtataA
Protein Sequence: MPRTYKRKTERANVAPDTVLRAVRAVRIENRSIRSVAREFGIPFRSLTRYCSRASENDIRGISQNPTFSIGYKKTRQEAANAQPQKSGDHDSGTRSSVQKAAEPAPKRTRRKDSDVGEDHVSIRTVNTQNSQRDEFSIFGEHVAFKLRNLKDRRSQSIAQFEISSVLFQVEMGNFRNLTHFNTSSVSPAGVQPPYLGTVASQIPSSTNYSALSPVVLLQPASSPVTGSASPPPQVPKLSPQSLHSNSSIAEDTETKSENDIVTMTSTSDYTEQPPKPTDHYILACFQASAAV

Sequence clustering based on sequence similarity using MMseqs2