Cfor002682.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- dnajc5
- Assembly
- GCA_013340265.1
- Location
- BLKM01000900.1:3645269-3675235[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-16 1.3e-13 49.9 0.1 1 45 30 74 30 74 0.93
Sequence Information
- Coding Sequence
- atggaGGAAGTCCAAAATTGGAATGTTTCTGAATGTGATAGATCATTAGAACTCTATAGAAGTGCTaTGGCTCAAAGGAAAAACTGGGACCCGGAAAGGATGAAGGCAGCTATTGAGGCTGTGAGGAACAAGGAAATGGGCAGCAAGAAGGCTTCCAGGGTTTTCAACGTACCCAAAACAACATTACAGCGCTATGTTAAAGACCGGAGTACACGACAGCGCGAACATGGATCACAGGCAGCGAGGCGTAGCTATGTGATTGACATCCGCGGGCGTGAAGGTGAGCAGGTGGGAGAAACCTGGATGCCCAGTATGAACCATCATCATTCTGTTGACGTGACGCAGTTTGCAGTTCGCATAGGCGGTAATATTGTACGTAACCAATCGTATGGTACTTGGGCCATGGATCAGACTACTGCTGGTGACTCACTTTATCAGATCCTGGACCTTCCCAAAACTGCCACTGCCGATGATGTGAAGAAGACTTACAGGAGATTGGCACTTAAGTATCATCCTGACAAAAATCCAAACAATCCTGAAGCAGCAGAAAAGTTTAAAGAGGTGAATCGTGCCCACAGTATTCTGAGTGATTTAACAAAACGTAACATCTATGACAACTATGGTTCCCTTGGTCTGTATATTGCAGAGCAgtttggagaagaaaatgtCAACGCTTACTTCCTAGTCACATCAGGCTGGTGCAAGGCACTTATCCTGTTCTGTGGCATCATCACTGGCTGCTACctgtgttgctgttgctgctgttgctgcaacTTCTGTTGTGGCAAGTGCAAACCTCGACAACCAGAGGAGACTGGAGACTACCACACCTTACATAGGAACCCTGCATCAGGGACTGATGGACGAGTGGTAACATCTCAACCCCGGACTACAGCAAAGGAGGAACCAAGTGATGATGAGTCTGGTGCTCCAGCTGTAACATCACAACcagcatcatcatcagtgtTCGCAGTGCCGCTCCCAGCTGACAGTAAtgcaacagaaaacacattgctgAATCCACAGGATAAGGTTACATATACACCAG
- Protein Sequence
- MEEVQNWNVSECDRSLELYRSAMAQRKNWDPERMKAAIEAVRNKEMGSKKASRVFNVPKTTLQRYVKDRSTRQREHGSQAARRSYVIDIRGREGEQVGETWMPSMNHHHSVDVTQFAVRIGGNIVRNQSYGTWAMDQTTAGDSLYQILDLPKTATADDVKKTYRRLALKYHPDKNPNNPEAAEKFKEVNRAHSILSDLTKRNIYDNYGSLGLYIAEQFGEENVNAYFLVTSGWCKALILFCGIITGCYLCCCCCCCCNFCCGKCKPRQPEETGDYHTLHRNPASGTDGRVVTSQPRTTAKEEPSDDESGAPAVTSQPASSSVFAVPLPADSNATENTLLNPQDKVTYTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -