Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00013 0.16 11.2 0.1 5 37 2 33 1 40 0.75

2 4 1e-11 1.3e-08 33.9 0.0 3 41 50 87 48 89 0.90

3 4 0.027 34 3.8 0.0 23 37 124 138 108 146 0.76

4 4 3.6e-10 4.5e-07 29.0 0.0 4 37 166 199 163 202 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00013	0.16	11.2	0.1	5	37	2	33	1	40	0.75
2	4	1e-11	1.3e-08	33.9	0.0	3	41	50	87	48	89	0.90
3	4	0.027	34	3.8	0.0	23	37	124	138	108	146	0.76
4	4	3.6e-10	4.5e-07	29.0	0.0	4	37	166	199	163	202	0.92

Coding Sequence: ATGATGTTGGCAGCATTAGAGGATCTCCGAGCAGGACGAACTCTTGTAGAAACAGCTGCAACCTATCATATTCCTCGCTCAACTCTGTATGTGAGAGCTCGAGCACACGGCATTGCCCTTTCCATCACCAGACAGGAACATTCTGGTGAAAGAGTACAAGCTGCAGTCCAAGCTGTTGCAGATGGTGCAAGTTTGCAGCAGGCAGCTGAACTCTTTAAGATTCCAAAGACAGTGCTTTGGCGACGTGTACAGAAGGAAATGGGGAGTTTTGCAATGAGTTGTCGTGCTAGGATGAAGCAGTCATACGGCTTGGATAAGAAACAGGCAGCAGTAAAGGCATTGGAAAGAGGAGAGAACCTCACTAAAGTGTCCCACCAATTTCAGATACCAAGAACAACTTTGTTTCGTGAGAAAGCACGTTTGGTAGAAGCTGGAAGACTTCCATGGACCTGTCTGCGAAAACGGAATCCTGATATTGGTGGCTTCAAGCAGCACAGACTTAGCGAAGCTGTAGCAGCTTGTAAAGAAGGGAAAATGTCACAGGCTGTGGCTTCTCTCACCTTCCAGGTTCCTAAAACCACAATCTGGCGTAAACTTCAGCAGTGTTCAAAAACAGAAGCAGCTGGTTCTGAAGGGAATGAAGCTGATACTGCTGCAGCCCAGCTGCAGGACCGCACAGAATTTGCATTTAGTGAGGTTTCATCACAAATTCCAGTCACGTATATTGATGAATCAGATTTCCCTGAAGCCTCTCTCATTATTCTTACTGCAGGTGGTAGTGAAGGTATTGAAGAGCAGATTATAGTCAATAGGG
Protein Sequence: MMLAALEDLRAGRTLVETAATYHIPRSTLYVRARAHGIALSITRQEHSGERVQAAVQAVADGASLQQAAELFKIPKTVLWRRVQKEMGSFAMSCRARMKQSYGLDKKQAAVKALERGENLTKVSHQFQIPRTTLFREKARLVEAGRLPWTCLRKRNPDIGGFKQHRLSEAVAACKEGKMSQAVASLTFQVPKTTIWRKLQQCSKTEAAGSEGNEADTAAAQLQDRTEFAFSEVSSQIPVTYIDESDFPEASLIILTAGGSEGIEEQIIVNR

Sequence clustering based on sequence similarity using MMseqs2