Cven021349.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- stc
- Assembly
- GCA_027574865.2
- Location
- JAODAH020051043.1:6562-11177[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 2.1e+04 -3.9 3.0 6 10 236 240 232 240 0.61 2 13 0.1 1.2e+03 -0.0 0.6 4 10 266 272 265 277 0.95 3 13 2.2e-06 0.026 14.9 15.5 3 19 280 296 272 296 0.84 4 13 2e-06 0.024 15.0 11.8 1 19 332 350 332 350 0.97 5 13 1.1e-06 0.013 15.9 15.6 1 18 390 407 380 408 0.84 6 13 4.9e-06 0.058 13.8 14.3 4 19 455 470 448 470 0.87 7 13 0.99 1.2e+04 -3.1 2.2 5 10 499 504 499 504 0.93 8 13 2 2.4e+04 -4.7 14.8 1 11 510 520 510 532 0.88 9 13 2.1e-10 2.5e-06 27.8 11.5 1 19 537 555 537 555 0.98 10 13 0.8 9.4e+03 -2.8 2.3 6 10 584 588 583 589 0.57 11 13 0.031 3.7e+02 1.7 18.5 1 19 594 611 594 611 0.83 12 13 4.6e-08 0.00055 20.3 18.4 1 19 647 666 647 669 0.96 13 13 0.0017 20 5.7 15.6 3 19 677 695 676 695 0.93
Sequence Information
- Coding Sequence
- ATGTCCCATTGGGACCCAAATCATGGTGCCCCTAGAAACCATCAGGGGTACCGGAACCACATCAACGGATTAAACCCCCCATATCAACAAATTGCTCAAAATTCTTGGGAACCTCCATATAACAATAATCAAAACAATGCTCAGGGATCCAATTCCAGCCGTGTGATTGACATACACAATTCCAATTTACAACCGACTGCTTCAGAATTCCGACCAGGGACTTCATACAATCATGGAGCTATTCGCAAGAAACCGAATAAAACGAGGGTGTATACCAGTAAATCAGAACATTACGAAACATGGAATCGaccaaataaaagaaacgatCGGGAAATTTCAGAATCTTTTGGTAAAATGAAAGTGGATGACAGATCTTTCCGTTCCAAATCAAATggcttttataataatacttGGCGGAGAAACGAAAAACGTGCAGAGAATTGGAGAGGAAACAGACAGGATGATGGTGATACAAAGTCATTCAAACCGcatcaatctaaaaaaaaatTGGATGCTGCATCCCAACGTGAACGTTTGGAACATATGGTGACTCATCGCACTTTAGAATGTTTAGTATGCTGCGAAAAATTGCGTCACACTGATAAAGTTTGGTCGTGCAAACAATGTTATCACATCCTCCATTTAAATTGTGTAGTGCAATGGGCGGAAGCGTCAAAATTAGAAACTGGTTGGAGGTGCCCGGCCTGCCAAAatgtttgcaataaaattccaaGAGAATATCGTTGCTATTGTGATAAGTACACAAACCCCAGTTTAGAACCTGGAACCATCCCGCATAGTTGCGGAAAAGTTTGTGGAAGAAAGGGTCGTTCTTGTAAACATACATGTACTCTTTTATGTCATCCAGGTCCTTGCCCCGATTGTACTGTCATAGTAGCTCGTCCATGTGGTTGTGGAGCAACAAAACCAACGGTTAAATGTAGTTCTGAATTAGAAATTGTTTGTCAGGGAGTTtgcaagaaaatattaaactgtGGTGTGCATATTTGTGAAAAGAAATGTCATATTGGAGAATGCGGTGattgtaaagaaattattgatcAAGAATGCTATTGTGGGAAGGCAGAACGAAAAATTGTGTGTACAAAAGAAGTGCAGAAAAGTACTAAATATGAATGTGGGGAAGTTTGCGGGAAGGATCTTCAatgtaaaaatcataaatgtaaaaagttatGCCACGAAGGGGATtgtgaaaattgtgaaatggACCCAGAAATTGTTAAGAGATGTCCTTGTGGACAAACATTATTGGAAGTGGAACGCACATCGTGCCTTGATCCTATTCCATGCTGTGATAAGgtttgtaataaaaagttaCGTTGTGGTCAACCAGGTGATCCTCATCGGTGTAAATCACCTTGTCACATTGGGGATTGCCCTGTTTGTCCCTTAGCTACTTTTGTAAGGTGTCGTTGTGGACATATGGATAAAGAATTGGCCTGTAAAGAATTGAAATCGAAAGCAGATGATGCCAGATGCCAAAAGAAATGCACTAAAaAACGATTATGCTGCAAACATAAATGTAATCAACTTTGTTGTATTGAAGTTGAGCATATCTGTCCGTTACCATGTAATCATCTTTTATCATGCGGATTACATCGTTGTGAAAGTACCTGCCACCGTGGGAGGTGTCAACCATGTTGGAGGACAAGTTTTGAGGAATTATATTGTGAATGTGGATCTAGTGTGGTATATCCACCTGTAGCATGTGGTACGCGTCCTCCACCCTGCCAAAAACCGTGTTCCCGTGTACGACCATGTGGTCACGAACCTCATCATAATTGCCACACTGGTCCATGTCCACCATGCACGGTATTCACTACACGTAATTGCCACGGTGAACATGAATCCCGCCAAACCATTCCATGTTATCAAGACGATTTTAGTTGTGGCCTTCCCTGCAATAAGGAAATGGCATGTGGGCAGCATAAATGCATTCAAATTTGTCATAAAGGACAGTGCCCAAATCCTTGCACTCAACCTTGCACTATAATACGTCCTAATTGCGAACATTCCTGTAATCAGCCTTGTCATAAACCGCCATGTCCAAATATTCCATGCAAACAGACTGTGGTGGTTACTTGTCAGTGTGGTTTGCGAACTAGCACACGATCTTGTATTGATTTAGCAGGTGACtatcaaaaaattgcaatgtcACAATTGGCTTCTAAAATGGGAGACATACAACGTGGTGGAACCATCGACATTACTGATATAGTCAAACAAAAGAAATCGGGCACGCATAGAACATTGGAATGCAATGATGAATGTCGCCTTGTAGAACGGAATCGTCGCCTTGCAATTGGTTTACAAATCCGTAATCCAGATTTAAGCTCGAAATTGACACCACGTTATTCAGAATACATGCGAAATTGGGCAAAAAAGGATCCACGTTTTTGTCAACACATCCATGATAAATTGTCTGAATTGGTACAACTGGCCAAACAAAGTAAACAGAAAAGTCGATCACATTCCTTTGAATGCATGAATCGTGAAAAGCGGCATTTTGTTCATGAATATTGTGAACATTTTGGGTGTGATAGTGCTGCTTATGATAAAGAACCTAATAGGAATATTGTAGCTACTGCACACAgggATAAATCTTGGTTGCCAAGTGTAAGTTTAATAGAATTGTTGCAGCGTGAGAATGGTCAGCGTAAAGTTCCAGGTcctgttttaaataaacctaGCGCAAGTAATTTAAATCCTTCTGGTGGTGGATCCGTTTCATTAAAACTTCAAAGTCGCGCTATGCCTAGACCAGTAACTCCTCCAAGTGAATTTGTGGACTATTTTGATAATCCaccataa
- Protein Sequence
- MSHWDPNHGAPRNHQGYRNHINGLNPPYQQIAQNSWEPPYNNNQNNAQGSNSSRVIDIHNSNLQPTASEFRPGTSYNHGAIRKKPNKTRVYTSKSEHYETWNRPNKRNDREISESFGKMKVDDRSFRSKSNGFYNNTWRRNEKRAENWRGNRQDDGDTKSFKPHQSKKKLDAASQRERLEHMVTHRTLECLVCCEKLRHTDKVWSCKQCYHILHLNCVVQWAEASKLETGWRCPACQNVCNKIPREYRCYCDKYTNPSLEPGTIPHSCGKVCGRKGRSCKHTCTLLCHPGPCPDCTVIVARPCGCGATKPTVKCSSELEIVCQGVCKKILNCGVHICEKKCHIGECGDCKEIIDQECYCGKAERKIVCTKEVQKSTKYECGEVCGKDLQCKNHKCKKLCHEGDCENCEMDPEIVKRCPCGQTLLEVERTSCLDPIPCCDKVCNKKLRCGQPGDPHRCKSPCHIGDCPVCPLATFVRCRCGHMDKELACKELKSKADDARCQKKCTKKRLCCKHKCNQLCCIEVEHICPLPCNHLLSCGLHRCESTCHRGRCQPCWRTSFEELYCECGSSVVYPPVACGTRPPPCQKPCSRVRPCGHEPHHNCHTGPCPPCTVFTTRNCHGEHESRQTIPCYQDDFSCGLPCNKEMACGQHKCIQICHKGQCPNPCTQPCTIIRPNCEHSCNQPCHKPPCPNIPCKQTVVVTCQCGLRTSTRSCIDLAGDYQKIAMSQLASKMGDIQRGGTIDITDIVKQKKSGTHRTLECNDECRLVERNRRLAIGLQIRNPDLSSKLTPRYSEYMRNWAKKDPRFCQHIHDKLSELVQLAKQSKQKSRSHSFECMNREKRHFVHEYCEHFGCDSAAYDKEPNRNIVATAHRDKSWLPSVSLIELLQRENGQRKVPGPVLNKPSASNLNPSGGGSVSLKLQSRAMPRPVTPPSEFVDYFDNPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -