Cven001908.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coproporus ventriculus
Gene Symbol
-
Assembly
GCA_027574865.2
Location
JAODAH020004583.1:2638-6372[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.041 3.9 8.5 0.1 2 23 249 271 248 271 0.89
2 16 0.001 0.098 13.5 0.1 1 23 325 348 325 348 0.97
3 16 0.47 44 5.2 0.4 1 23 386 408 386 408 0.95
4 16 0.082 7.8 7.6 2.2 1 23 440 463 440 463 0.97
5 16 0.00039 0.037 14.9 4.6 1 23 466 489 466 489 0.96
6 16 0.021 2 9.4 2.6 2 23 496 518 495 518 0.95
7 16 0.0018 0.17 12.8 4.4 1 21 594 614 594 615 0.95
8 16 0.0038 0.36 11.7 1.4 2 23 627 649 626 649 0.91
9 16 0.5 48 5.1 0.6 1 23 652 675 652 675 0.95
10 16 0.029 2.7 9.0 0.1 3 23 682 702 680 702 0.93
11 16 0.63 60 4.8 0.4 2 23 736 758 735 758 0.94
12 16 0.08 7.6 7.6 0.9 2 23 767 789 766 789 0.94
13 16 0.38 36 5.5 0.0 3 23 796 817 795 817 0.89
14 16 7.4 7e+02 1.4 2.1 3 23 923 944 922 944 0.94
15 16 1.1 1e+02 4.0 0.2 2 23 951 973 950 973 0.90
16 16 0.16 15 6.7 0.9 1 23 986 1008 986 1008 0.96

Sequence Information

Coding Sequence
ATGGAAAATAAGTTGTGTCGCACCTGTGGTTCCTTCACCACAGATGCAGTGCACATCTTTCGTACTGAAGgtcttaaaaacaaaattgaaacatgTTTACCGATAGTGctCACACCGCATTGCCTCCTCCCAGACACCATCTGTTCAAAATGTTACGAAAACATCAAACACTTttacgattttataaaaacatgtttGCAAGGGATCATAATACTCGAGACGCAATACGATGTAACAGAATCATGTTTGAAAACAAGACGAAGACACGAGAAATCCACCTCAACCGATTTTCCTCTCCTTGTGGATCAATCATTAACTGAAGaattggatttaaaatattgcaaggaaaagattcaaaattttgcagaaGAATTGgccaaaattgaaagaaatctTAATCTTAATTCTCATCCTCTTGTTAATTATGAGAGCAGCTCCGAAGATGATACTCAAACATCCAcaaatatttccaataaattgtattttgatgataaagaaaatgatctgataaatgaaattaccgaaaggaaatctttaaaaagaaaagctCCTAGTATATTAAGTAGCactccaaaaatatttaaattggataCGAATCGACGGAAAAGGCGTCCCCCTGTTAAAGTACAGCATGCAGAGAACGATTTTAACACCCTGGAAcagatttataaagaaatacaaGAACAAAAACCTTCAGCGGTtgttaaagaagaaattctGGAAGTTGCACCATCTTTACCACAAGTTTGTTTGTTATGTGATACACAATTTGTTGGACCATCACAATTGGCAACGCATGTTTTTGAAACGCACGGGATTGATATGGCTCAAATTATGTCGAATGAGCCGGTTCttgaaagaaagaagaagttACCAAATCTTGTCAAGATTGCCGATCTAAAGCAGAAGCGTGATTCTCAAGaatCAAAACCACACGAAAATGGTGAAGAACCACCGACATTAGAGCCTAGTTATGTATGTCCTTTATGCCCGGCGTCGTTAACCATTAAAAGTGAGCTCTTCCAACATTTACGTTTAAAACACCAACCAAAATCCCAGTTACTTTGTGGATTATGCTTGCATATGTCCAGTTCATATGCGACCCTGACAGATCATTTAGAAACATGCATTCAAATGCATCCAGTCACAAActtatatatttgtaaaatttgcaaatacaGTGATGATAATCAGAAGAACACAGAAAATCATGTTTTAGTCCACGAATTCATCataaatttctgtaaaaaggaaggaaaaatttttgaccCAGCCGATTACATCGACCTTAATCCAAACTGTgatattccaaaattataCTCTTGTACAGAATGTGGGGCTTCCCACAGCTCCTTTAAAGAATTCTCAGCGCATCGTCGTTCATCCCACTCAATTTTCCACTGCGATTTATGTAATAAGTTTTATGGGCGCAATTCGCATCTATGGAAACACGTGAACCGGCTACATAAAGGACACCCTTCCATTACATgtcaattttgttataaaaccaGCGCTTCAAAATATCATCTTGCacaacatttcaataaaatccatACAGTTAAAActgggaaaattaaaaacggtGATATTGAAGAGGAAGatttcatgaataaaaaatttgaagcgTTTGATTTTCAAAGCGTTAGGCAAAGTTTTATGAGACAAGAGTTAGTGAAAAAGGAGGAGGAAACTATCGATGTACCAAAAGAAATCGATACAAGTAGCaatttgtatacaaatatCATAACAAATTATACTCCTCCGCAAAATAACGGGGAATTCAAGTGCCCGAAATGTTCGAAAGggtttcataaaaaaactctcctaaaaaaacataaaaagaattgtAGGCCACGTTTGCAGAAAGATTTATTAACCCGCTGCAAATCCTGTTCTAGGATTTTTAAAGATCGACAAAGCCTTGCAAAACATTTAGTGAATTATCACAGTGAATACGCTTGCGAAATTTGTGAAGAGAAAGTTCAAAGTAAATGCGAGATAGTTTCCCACATTCGATTTAATCACCCATCGTGCCATTTATTTTGCGGGGAATGCGGAAACGTTCTACGCAGCCAAGAAGAACTCCGAATACACTCACAGGATCACACGAATTCATTCGTGTGTCAGTTTTGCGCCGATTTACTCCCCAGCAAGATCAAACTCAAAATGCACATTTTAAGTTTACATCGGAAAATCCTTAGTTTAAGTTGCGGggtttgtttgaaattatttgagaCGCAGCACATACTTAGAGATCATGTTCGTTTGGTGCACCGTGATGTATTGCTTCCACTTACTTCCTGTACTGTTTGCGGAAAAAATTATGGATCCAAATGGAAAACGTACGATCATCTCAATAAGTCACATGGAAGGATATTTAAAGCTTGCAAGGCGTGTTTGGAAGTATTCGATACGGAACGTGATTTAGAAGCACATTATGATGCCGCACATGGGAATGCCCCAAAGGAAAAAGCCATACGGAAAGAGgtgGTGAGGAAAGAAATTTACGAAAGTGAACCGGAACGGgaggaaaaaatttcatcatctGCTGAAGAAGAAAGTGGAGGTGAAGAAGACGCAAAAATTTCTCTTCTAGAAAAACGTCTAACAAGTATTCCTGATGTAGTCACGCCCCAAAAATTAGTTGTCCCCAAGAAAAAGTCgaagaaattatcaaataaatccgATCTAGAATACAATCCGGACCAAAACGGTACGAATAGTTCCAAACGTACAGTATATGTAAACTCAAACGATCCCTCACTTTGTGAAATTTGCTTAAAAACTTGGCCAGCTAAAAAACACCTTTGGCAGCATTACATCCGGTGCCATAAATTAGTTGCCGCAACCGTTTGTGGAATTTGCCTGAAAACGAATGAAAGTTATGAGGCTTTACAAAAACATTTGCAAGACAATCATCCGACTCTTTTACATGGTAAAGGTTTTGGTTCGAATTTTATCTGCCGGATATGCGGTCGGTATCATAACGCAAGCTCCAAACTGAAACTTCACATGgcaattcatgaaaatttcaattggaatcttctggaaaatatgcaaataaaatcagaACCAGATGAAAcacaaaacgaaataaattatgagAATTTAATAGAACAAGTCGAGTGCAGCACGGATGATTCGAGTAGTTCATCGGATAGTGAAACGGAAAACTCACAGGATTCCCCAGAAA
Protein Sequence
MENKLCRTCGSFTTDAVHIFRTEGLKNKIETCLPIVLTPHCLLPDTICSKCYENIKHFYDFIKTCLQGIIILETQYDVTESCLKTRRRHEKSTSTDFPLLVDQSLTEELDLKYCKEKIQNFAEELAKIERNLNLNSHPLVNYESSSEDDTQTSTNISNKLYFDDKENDLINEITERKSLKRKAPSILSSTPKIFKLDTNRRKRRPPVKVQHAENDFNTLEQIYKEIQEQKPSAVVKEEILEVAPSLPQVCLLCDTQFVGPSQLATHVFETHGIDMAQIMSNEPVLERKKKLPNLVKIADLKQKRDSQESKPHENGEEPPTLEPSYVCPLCPASLTIKSELFQHLRLKHQPKSQLLCGLCLHMSSSYATLTDHLETCIQMHPVTNLYICKICKYSDDNQKNTENHVLVHEFIINFCKKEGKIFDPADYIDLNPNCDIPKLYSCTECGASHSSFKEFSAHRRSSHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLAQHFNKIHTVKTGKIKNGDIEEEDFMNKKFEAFDFQSVRQSFMRQELVKKEEETIDVPKEIDTSSNLYTNIITNYTPPQNNGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYACEICEEKVQSKCEIVSHIRFNHPSCHLFCGECGNVLRSQEELRIHSQDHTNSFVCQFCADLLPSKIKLKMHILSLHRKILSLSCGVCLKLFETQHILRDHVRLVHRDVLLPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKACKACLEVFDTERDLEAHYDAAHGNAPKEKAIRKEVVRKEIYESEPEREEKISSSAEEESGGEEDAKISLLEKRLTSIPDVVTPQKLVVPKKKSKKLSNKSDLEYNPDQNGTNSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKLVAATVCGICLKTNESYEALQKHLQDNHPTLLHGKGFGSNFICRICGRYHNASSKLKLHMAIHENFNWNLLENMQIKSEPDETQNEINYENLIEQVECSTDDSSSSSDSETENSQDSPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-