Cven021047.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- L_1
- Assembly
- GCA_027574865.2
- Location
- JAODAH020050353.1:56798-67166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.5e-07 9e-05 23.1 0.6 1 23 74 96 74 96 0.99 2 17 0.11 11 7.1 6.0 1 23 102 124 102 124 0.97 3 17 1.4e-05 0.0013 19.4 3.9 1 23 130 152 130 152 0.99 4 17 0.00073 0.07 14.0 1.2 1 23 158 180 158 180 0.97 5 17 0.0046 0.44 11.5 1.6 1 23 206 229 206 229 0.97 6 17 1.2 1.2e+02 3.9 1.1 3 23 261 282 259 282 0.87 7 17 0.013 1.2 10.1 0.1 1 23 319 342 319 342 0.94 8 17 2.4 2.3e+02 3.0 0.2 3 23 462 482 462 482 0.94 9 17 0.19 18 6.4 6.1 3 23 492 513 491 513 0.91 10 17 0.097 9.2 7.3 0.9 1 23 518 541 518 541 0.92 11 17 0.00027 0.026 15.4 1.1 1 23 602 625 602 625 0.97 12 17 2.7 2.6e+02 2.8 0.8 1 23 675 698 675 699 0.77 13 17 0.00013 0.012 16.4 4.4 2 23 710 731 709 731 0.97 14 17 4.1e-05 0.0039 17.9 0.6 1 23 740 762 740 762 0.97 15 17 0.25 24 6.0 0.7 2 23 770 791 770 791 0.96 16 17 0.00062 0.058 14.3 0.1 1 23 844 866 844 866 0.97 17 17 0.0017 0.17 12.8 3.1 1 23 873 895 873 895 0.97
Sequence Information
- Coding Sequence
- atgttgtttaaagGAAACAGTAGTCGATTGGAAATGGTTATCGAGAAAATTCAgttcaataaagaaaattccgATTCAACGGATAATAAAACAGgtCAGAGAAGTTCACCATCAACAAGTTCCGACCAAGCATCAACAGCTAGTTCCTGTCAAAGTTCCCTTAGTGATGTCGCGGAAACGGAAGAAACATTTACCATGGGCGCAACAGCCACTACTCCATATGAATGCAACATATGCAAACGAGCATTCTCTAGATCTTCTTTACTCGGGAAACACGTTCAGACACATACGGAGCAATTGCAATTTAGTTGTCCTTATTGTCGTCGGCTCTTTAAACATAAAAGATCCAGGGATAGACACACTAAACTTCACACTGGTGATAAAAAGTACAAATGTCTTCATTGTGAATCAGCTTTTGCCAGGAGtgaccatttaaaaatacacaTGAAAACCCATGACAACAAGAAACCTCATCAATGTGAATTATGCAATCGGGGTTATAATACTGCTGCTGCACTAGCTTCTCATCAACAACATCATTCCAAACAAGAACAACGACGGTGCGGAAGCAGTGCCAGCAGGAGCAGTGCAGTTAGCACGCCCAGTCCTTGCAATTATCGTTGCCTACAATGTTCGGATACATTCGAAAAAGCAGAGCATTTGCAGaatcattTAATGATGAACCATATGAATACAACATCTCAAACCAACCAAACGAATAATCTGCTCGATACgagttttaatatattaaaaacatcTATTGATATCCCAAAGATAGCTTGCATGTATTGTGGAAAGGATTTCCTTAGTATGAACCATATGTATCAGCATATACATGCAGAACATCGCGCGATATTCAACACTATTTCACAGAATATGAATTACACTCCTTTACAGTCACCTGGCATTGAAGATTTATCACCAAAACAAATCCGCCAAAATAACTCTCCAACATACGCCTGTGATCGTTGCACGATGAGATTCGACTCACCACTCCTATTACAAGAACATATAGAAAATGTACATTGGGGGCCCACCGAATTATATAAATACGATTTCGGCAGTTTATCtaattctaatatttctttagaaaaaggACAAACGAATGCATCGCAATCAAAACCAACTGATCTTAGTCGTAAAAGACTCTCAGAAAATCCGcctgaatataaaatagaaaagaaaaaaaatgatgaaaccGATCCGAAACAAACATCTCCTGCCACTTGTAGTCCTTACGATTCTAATGAAAAACCTTGCATATGTTCATATTGTTACGCCCAAatgccaaattttaaaatgtttcttttacaTATGGAAACGCATATAGGGATGAATGCATCTACAACAATCCTCCCTTTAAGCACATCGAGTACTTTGGGCTGTTGTTTATGTGGTGAACCAGCAAGAAACGCTCTGGAATTAGGCCGTCATATTTTCGGACATGCAATCGCTAATGTAACAGCCCGATGCTGTCACTGTTGCAAGAAACCTTTCGAGCAATTAGatcaattacaaaaacatCTCATAGAATCTCATTCTCAAACCGTCTACAAATGCACAAtatgcaatgaaattttagaaacacaTTTAGCTTTAcagGTGCATTTTTCGAATAAACACAGCCCGGAGTGTAAACATTTCAGGTGTAATTTATGTTCAGATCAAATATTCCACGATCAATTAACGGCAGAAATCCACGTGAATATGAAGCACAGTATTCAGTCACCTCTTAGTTCAAATGCGAGGAGTTACCATTTATCAAGATTTCCAGATGTTGAGTCTCGCATGGAATTTCCTACGTATCAATGTCCATTCTgccaaaaaacttttaaagatgAATATATGCAGTATGTTCATATACTTAAAGAGCACAATAACTCTCACGAGGGTGAAAACTTTTTGCTGGAAGCAAGTTTTGTGGGTAGAACAGTTCCGTCCGCATCTCCAAACTTTTCATACAATAAAACCGCGTCTCCATCGGAAAACCTTAGCAAACgagaaattaaagttggaaataattttagctGTGAAATATGTAATCGTGCAGATATAAGCAGTGAGGCTGAATTGACGgcacataaaaaattgcaccATGCAAAATCTAAAGTTGGAACGGTGAGTTTACAGTGCGCATATTGTAACGAACATTGTAAGTCTAGAAGTGATCTGGAAAACCATATGAAGTCGCATCAAATCGCTTGTGGTAAAGGGAAACACAAATGTAATATTtgtgatgaaatattttcatcgaATGGGACGCTTGCTGAACATAAATTATCACATTGCAAGATAGTAGCGGGGAATAGCTGCACTCAGTGTAAAACTGTACTTGTGGATGAGCAATCTTTTTACAACCATCAACTCCAACATAGCAATACAACTGCgAATTCGGAGAATAGCGAGGATTTTCAAAATCACGACCATGACGATGTTAATTTGGAATGCCATCTATGCAGGAACGTTCTCTTATCACCAATCAAACTCCAGATACATTTAATCGAACATAACTTTATGGGTATGGGTCAATATCGTTGTTATGTTTGTTCTTCGGTGTTTACTACAGCTGCAGGTTTACGTACTCATATTATAGCTCACGGATTAAATCACAGACCGTACGAATGCACTGattgcaaaatgaaatttttcttcaaaacgGAATTGGAGAATCATAGATATAGCCacatacataataaaaaccaTAATGGTTTTGAGTGTAATAATTCTCGACAATATGtagaatgtaaaaattgtacGGCTTCTTTCCcggaagaaaatttttatgaacatGCCGAAAAATGTAAACCGGAAGAATATGAAAGCAAGGATGAGGTGAAGAAGGaagtgaaaattgaagaagaacaGAAATCTTAG
- Protein Sequence
- MLFKGNSSRLEMVIEKIQFNKENSDSTDNKTGQRSSPSTSSDQASTASSCQSSLSDVAETEETFTMGATATTPYECNICKRAFSRSSLLGKHVQTHTEQLQFSCPYCRRLFKHKRSRDRHTKLHTGDKKYKCLHCESAFARSDHLKIHMKTHDNKKPHQCELCNRGYNTAAALASHQQHHSKQEQRRCGSSASRSSAVSTPSPCNYRCLQCSDTFEKAEHLQNHLMMNHMNTTSQTNQTNNLLDTSFNILKTSIDIPKIACMYCGKDFLSMNHMYQHIHAEHRAIFNTISQNMNYTPLQSPGIEDLSPKQIRQNNSPTYACDRCTMRFDSPLLLQEHIENVHWGPTELYKYDFGSLSNSNISLEKGQTNASQSKPTDLSRKRLSENPPEYKIEKKKNDETDPKQTSPATCSPYDSNEKPCICSYCYAQMPNFKMFLLHMETHIGMNASTTILPLSTSSTLGCCLCGEPARNALELGRHIFGHAIANVTARCCHCCKKPFEQLDQLQKHLIESHSQTVYKCTICNEILETHLALQVHFSNKHSPECKHFRCNLCSDQIFHDQLTAEIHVNMKHSIQSPLSSNARSYHLSRFPDVESRMEFPTYQCPFCQKTFKDEYMQYVHILKEHNNSHEGENFLLEASFVGRTVPSASPNFSYNKTASPSENLSKREIKVGNNFSCEICNRADISSEAELTAHKKLHHAKSKVGTVSLQCAYCNEHCKSRSDLENHMKSHQIACGKGKHKCNICDEIFSSNGTLAEHKLSHCKIVAGNSCTQCKTVLVDEQSFYNHQLQHSNTTANSENSEDFQNHDHDDVNLECHLCRNVLLSPIKLQIHLIEHNFMGMGQYRCYVCSSVFTTAAGLRTHIIAHGLNHRPYECTDCKMKFFFKTELENHRYSHIHNKNHNGFECNNSRQYVECKNCTASFPEENFYEHAEKCKPEEYESKDEVKKEVKIEEEQKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -