Cven005453.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- Zfpm1_1
- Assembly
- GCA_027574865.2
- Location
- JAODAH020013270.1:1332-4136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.5 3.4e+02 2.4 0.1 2 23 7 28 6 28 0.91 2 15 0.052 5 8.2 3.0 1 23 457 480 457 480 0.94 3 15 0.039 3.7 8.6 0.1 2 23 555 577 554 577 0.91 4 15 0.13 12 7.0 2.8 1 23 584 606 584 606 0.95 5 15 1e-05 0.00095 19.9 1.9 2 23 609 630 608 630 0.97 6 15 0.011 1.1 10.3 1.6 1 23 636 658 636 658 0.98 7 15 3.1e-05 0.0029 18.4 5.1 2 23 665 686 664 687 0.95 8 15 0.48 45 5.2 1.1 6 23 701 718 699 718 0.96 9 15 3.6e-05 0.0034 18.1 3.9 2 23 724 746 723 746 0.96 10 15 0.34 33 5.6 0.1 2 23 762 782 761 782 0.95 11 15 9.3e-05 0.0088 16.8 1.3 1 20 788 807 788 810 0.92 12 15 5.3e-05 0.0051 17.6 0.4 1 23 818 840 818 840 0.99 13 15 0.00069 0.065 14.1 3.7 1 23 846 868 846 868 0.98 14 15 1.1e-06 0.00011 22.9 5.2 1 23 874 896 874 896 0.99 15 15 0.00043 0.041 14.7 7.3 1 23 902 924 902 925 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCTGAAAATATAGTGTGTCCAGTATGTACACTGTACTTACGTCCGGGTATGACTTTAAAATCTCACTTGACAAGTCACCCGAAGCAGAAAGTAATAGATGCACTCGTTCGATTAACAAGTGAACCGCAAACGCAAGTAGCACCAACAACTAGTATACAAGCTACATCAAGTCAAACATGGACTCCACCTCCACCTCAGGTACCGACGAACCATTCGTTCATTTATCAACAATTTATGACTTCAACAGCTCCTCAAGCCAatgtattaaatgtaaatcaattgGGTCAACAATATGTCACCATTCCTGCAGTGTTCAATTCCCAAATGATGTGCCAACCATATGTCTACCAACAACAGCAAGTTATTATGTCATCTGGACCGCCCATACCTAGGTTGCTTCGTATAGAAGAGGCTCAACAATCCACACAAGTAATCGAAGAAATTCTTGATGATGACGTAGATAACCATCAAGAaccagatttaattttagtagaaCCAAGCAATAATGTTACTGTAGAACccgatttaattttagtagaaCGAGATGATGATGCCACTGTAAATATCCCTACCATTGAAAATCCACCTAGTGACGACGAAGAAACTTCTAATAACGATCATACGATTAAACATGATGAATCAATTGAAGTAATAGAACAAATTCAACAGGGGAACACGATTCTTCAAACAACAGAACCGCTTcatattaatatacaaaattcgTATGAAAGCGAAGATCATGAAGCAGGTTCTCCTTGCTCTAATGCCAGTTCAGATTACATAAAAGTACGAAGGGATCTAAACAAATCATGCCAAACACAACCTGAATCTTTCGAAAATTGCACTGGCACTTCAAGTTATGTCACTTTAACAAATAATGTGgcaaatcaaaatgaatctAATGAAGTACAAATTGCGGAGCAACAGAACGTGTTGGATATGGATGGTatgaatttaatgttgaaTCATGAATTCATTCCgaatcaaataatttcacaagTTGAGGATTTTGATTATGGAAATCGATATGATCGTACacgtattttattaaatataagtgAATCTAATCAGGAAATTGGTGATGAAAGCGTTTCGGTAGATAGTGCGAATATTCGTGCAGACGAACATATGCCGCCGCGTGGAGAATTATCTGGGCAAGAAAGTAATGCAAGTGACATGGCCTGGACTCGAATACAATACAACAACGGAAATTCAGGTGTAACCTCTCCTTATAACTTATTAGCGAGTAATACATGGGATGGATCAGATGTTTCCAATAATGAAGTTGTACCTCCTTTGGAAAATCGGGCATTTGATAATGATACCCCAACAGTTTCTGGTTATTCTGATCCTCCCATTCAATATAAATGCCCGACAtgtgatgaaaattttagttgtcCTAAAGAACGCCGGACCCATCAAAATGAAAAGCATGGTAAGGTGACCGGTAATGTAATAGGTTCCAAAATCGGAaaggaaaaagtaaaaaaattggttataAAACCTAAGAAAGTAATCGAAgtgaaaactgaaaataattttgataacgTTTTcacgaataaattaaaacttgagAGTGAAGGGGCTCAGACGGATGTAATAGGGGAAATTACTGAGATAGTAGAAAAAAAGGAAGTATTAACTGAAAATCCGGTTGTTTGTACTATATGCGAATCAATTTATCCGGATAATACAACTTTAAAACAACATCAATTTGAAGTTCATAATATTGCATCAAACCGTTATAAATGTGCCGTCTGTGATGAAACTTTTTCGTGCGAGCCAAAATTTACAGAACATTTACATGTACATCCATTGGAATGTAGATTATgcggtaaatatttttatcgtcGCCAGAATCTACAATTACATATGAAACGCCATTTAGGTATACGACCGtacaaatgtttaatttgttctAAATCGTTCttaaccaaacaaaaattggacgagcataaaaatatacatacagGTGAAGCCCCCATCAAGTGTTCATTATGCGATGAAACTTTCCGCAGGCATTCAAATTTAGTTCAACATCGTAATCGCCatcatttcaatataaaaaagaaaactcggGATTATATATGTTCGTGCGgagaaatttttcattccaaAAAGAAACTCGCTTGGCATAAGGAGATCCATGACAATAAACCAAAATCTTGCACACATTGCAGTGAAAAATTTATCCACGCGGCGAGTTTAACACGTCACATGCGAAGAGCTCACAATGAGAAATTTGTTCCGCAAGAAGACCGCAATAACGAAAACGTTGTATGTCCGATATGCAAGggaatttacttaaaaacaaGTCTAGAGATGCATATCCGGAATCATAGCGGACAACGCCCTTACACTtgtttaatttgcaataaagaTTTCACGacgaaatggaatttaaaattgcataagtGGACACATGCTTCCCGTGCATCTAAACCCTTTAAGTGTGATCAGTGTAAGGGAGCTTTTATCCGAGAATCTGATTACACCGCTCATATGAACTCGCACAAATCTATCAGGCCGTACACTTGCAATTATTGTGGTGCgcaatttataagaaaatataactgCCAAAGGCATGTTAAAGAACacgaaaaagtaaaaactttCAAGTGCCAGATTTGCAACAAAACCTTCCACCGATCGTATTATCTCAAAGATCACATGCGTGTGCATAGCGGTGTACGTCCGTATTCTTGTCACATATGTGGTAAAACATCAACTACAAAATCGAATCATAACAAACACGTTCGTATCCACCACGCACGCGAACCAGTCAGCACTGAGaattaa
- Protein Sequence
- MESENIVCPVCTLYLRPGMTLKSHLTSHPKQKVIDALVRLTSEPQTQVAPTTSIQATSSQTWTPPPPQVPTNHSFIYQQFMTSTAPQANVLNVNQLGQQYVTIPAVFNSQMMCQPYVYQQQQVIMSSGPPIPRLLRIEEAQQSTQVIEEILDDDVDNHQEPDLILVEPSNNVTVEPDLILVERDDDATVNIPTIENPPSDDEETSNNDHTIKHDESIEVIEQIQQGNTILQTTEPLHINIQNSYESEDHEAGSPCSNASSDYIKVRRDLNKSCQTQPESFENCTGTSSYVTLTNNVANQNESNEVQIAEQQNVLDMDGMNLMLNHEFIPNQIISQVEDFDYGNRYDRTRILLNISESNQEIGDESVSVDSANIRADEHMPPRGELSGQESNASDMAWTRIQYNNGNSGVTSPYNLLASNTWDGSDVSNNEVVPPLENRAFDNDTPTVSGYSDPPIQYKCPTCDENFSCPKERRTHQNEKHGKVTGNVIGSKIGKEKVKKLVIKPKKVIEVKTENNFDNVFTNKLKLESEGAQTDVIGEITEIVEKKEVLTENPVVCTICESIYPDNTTLKQHQFEVHNIASNRYKCAVCDETFSCEPKFTEHLHVHPLECRLCGKYFYRRQNLQLHMKRHLGIRPYKCLICSKSFLTKQKLDEHKNIHTGEAPIKCSLCDETFRRHSNLVQHRNRHHFNIKKKTRDYICSCGEIFHSKKKLAWHKEIHDNKPKSCTHCSEKFIHAASLTRHMRRAHNEKFVPQEDRNNENVVCPICKGIYLKTSLEMHIRNHSGQRPYTCLICNKDFTTKWNLKLHKWTHASRASKPFKCDQCKGAFIRESDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHEKVKTFKCQICNKTFHRSYYLKDHMRVHSGVRPYSCHICGKTSTTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -