Cven004662.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- ZFX
- Assembly
- GCA_027574865.2
- Location
- JAODAH020011392.1:1882-3399[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 2.4 9.2 4.0 1 23 130 153 130 153 0.97 2 11 0.12 11 7.1 0.1 1 19 158 176 158 178 0.96 3 11 3.9e-05 0.0037 18.0 0.6 2 23 189 211 188 211 0.96 4 11 1.1e-05 0.001 19.8 2.1 1 23 217 239 217 239 0.97 5 11 0.00012 0.011 16.5 1.8 1 23 245 267 245 267 0.96 6 11 3e-06 0.00028 21.5 1.2 1 20 273 292 273 293 0.96 7 11 8.8e-06 0.00083 20.1 1.8 1 23 304 326 304 326 0.99 8 11 2.8e-05 0.0027 18.5 3.4 1 23 332 354 332 354 0.98 9 11 4e-05 0.0038 18.0 4.2 1 23 360 383 360 383 0.98 10 11 5.2e-05 0.0049 17.6 3.3 1 23 397 419 397 419 0.98 11 11 4.7e-05 0.0045 17.8 0.5 3 23 427 448 425 448 0.97
Sequence Information
- Coding Sequence
- atgttACAACCACCTGCAGAAGAATCTTTGGAGTTTTCTTgcttgatttgtttggtacgagatgatttaattaatacaaatgcAACCGATAGTAATAATGTCGAATGGAAATCAAAATTAAGTTATTGTGTCCCAGAAATTgattGGAATATAATCTGCTATCTCTGCCAATTATGCGCAGGACAACTGGATCTCCTATGTGCTTTCCGCACCCAATGTGTCACCTCATACTTCAACCGATTTAAACCAATCACACACAAAGAAACAAATTCGATTTTGCCAATTCAAGAAACTACGATAGAAGTACGATCTGATTCTAAAGtgatttacaaagaaaattttgatactcAAACCCAAGAAGATGCACATCCCCTTTCCGAACCGACTTTTACCTGTTACCATTGCTCCCAAACCTTCCACGAAAAACCCCGCTTGATTGAACACATAAAATCCGACCATGAAACAATTTCGTACACATGTGAATTATGCTTGGGAGTTTACACCACGCgtaaaaaacttgaaatacACAAAGTGGATTGCGGCacgaataaaaagaaacaaatccGTTGTGAACAGTGCGGGAGTGGATTCAGcacgaaatatttatttaaccgaCATGTCCGGAATGTGCATGCTACTGAAAAAAAACATAAGTGCGAGATTTGCGGACAAAAATTTGCTTCGTCCGTATATTTAAAAgctcataaaaaatatcattcggGGAATCGATCGCatatttgttcattttgtGGGAAAGGGTACATAACCGCAAGCGATTTATATCACCACGAAAAAATCCATGCGAATAAACGCGCATATAAATGTGATAAATGCCCGAAAGCCTTTAATACATCGAGCGATTTACATAAACACAGAATTTGTGTTCATATGGATCGATCGCTTTGGAAGTATTCCTGTAGTTATTGCGGACGGAGGTTTCCCCTTAAAACAAACCTGGATTCACACACTAAAACTCATACAGGGGAGAAGAATTACGTATGTCATTTATGCGATCGACGTTGTATAAGCCAATCGGTTCTACAAAGACACATACAATCTCATTCAAATGTGCGTTCTTATAAATGCACGCATTGTAATCAGGAGTATAAATATCAGAAATCTCTGAATGTACATTTGAAGAAGGCGCATGGGATTGGAGATGTTAAATTACCCGAACGggttaagaaatatttttgccaTATTTGTCCCAAATcgtattttgcaaataataagCTGCAGAAACATATAAGGAGTCATACAGGGGAACGTCCTTTCGGATGTGAGTTAtgtgaaaagaaatttgtggATAAATCGTATGTTAAACAACATTTAAAGACGGCACATAATGTGGTTTTACCTGTTAATACTTAA
- Protein Sequence
- MLQPPAEESLEFSCLICLVRDDLINTNATDSNNVEWKSKLSYCVPEIDWNIICYLCQLCAGQLDLLCAFRTQCVTSYFNRFKPITHKETNSILPIQETTIEVRSDSKVIYKENFDTQTQEDAHPLSEPTFTCYHCSQTFHEKPRLIEHIKSDHETISYTCELCLGVYTTRKKLEIHKVDCGTNKKKQIRCEQCGSGFSTKYLFNRHVRNVHATEKKHKCEICGQKFASSVYLKAHKKYHSGNRSHICSFCGKGYITASDLYHHEKIHANKRAYKCDKCPKAFNTSSDLHKHRICVHMDRSLWKYSCSYCGRRFPLKTNLDSHTKTHTGEKNYVCHLCDRRCISQSVLQRHIQSHSNVRSYKCTHCNQEYKYQKSLNVHLKKAHGIGDVKLPERVKKYFCHICPKSYFANNKLQKHIRSHTGERPFGCELCEKKFVDKSYVKQHLKTAHNVVLPVNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -