Cven012885.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- -
- Assembly
- GCA_027574865.2
- Location
- JAODAH020030981.1:1-1867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2e-06 0.00021 22.0 3.0 1 23 16 38 16 38 0.98 2 15 0.055 5.2 8.1 4.0 1 23 43 66 43 66 0.94 3 15 1.7e-05 0.0016 19.2 4.8 1 23 79 101 79 101 0.98 4 15 1.6 1.6e+02 3.5 1.3 2 23 107 129 107 129 0.93 5 15 4.9e-05 0.0047 17.7 0.5 1 23 136 159 136 159 0.98 6 15 0.37 35 5.5 2.5 3 23 168 189 167 189 0.96 7 15 0.74 70 4.6 2.3 2 23 203 225 202 225 0.89 8 15 1.7 1.7e+02 3.4 0.1 2 23 254 276 253 276 0.81 9 15 8.3e-06 0.00078 20.1 1.7 1 23 282 304 282 304 0.98 10 15 1.4e-05 0.0013 19.5 3.5 1 23 310 332 310 332 0.97 11 15 1.9e-06 0.00018 22.1 2.4 1 23 338 360 338 360 0.95 12 15 9.2e-05 0.0088 16.8 0.3 1 23 366 388 366 388 0.98 13 15 1.4e-06 0.00013 22.6 1.9 2 23 394 415 393 415 0.96 14 15 0.013 1.2 10.1 4.1 2 23 422 443 421 443 0.96 15 15 1.2e-06 0.00012 22.7 0.3 3 23 451 472 449 472 0.96
Sequence Information
- Coding Sequence
- CCCAAAATCAAAAGTGACACTTCCGCACAAACCGGAAACGAAGATTACACATgcgaaatatgcaaaagatcattcaataaaaaatcgttactcaaaaaacattcaaaaatccACAAACTACCAACCCACCACTGTTCATTCTGCAGTTACGTTGCAAAAACACCAACAGATCTACAAAAACACAACAACAAAGATCATTGCCTTCCAAATCcggaagataaaaaaaaaattaatttccattgtAACATGTgcgaaaaatttttcaaaacaagtAAAGAATTGATCTATCACATTAGGAAACACAAGATCACGATACGAAAGTGCACCATGTGCGATTATTTCCctaaaaattatcaagatCTTTTCGAACATAAAACTAAAGATCATCCggaatctacaaaaaaatatcaatgcaAAATTTGCGATGAATTTTTTGAGTTGATCAGGGATCTTGAAAGGCATCTTAAAAAGATCCATGAAATAACCAATCTAGAAATGTTTTGTCGTTTTTGTGATTTCATCGGAAAAGATCGGAAGGATCTTGTTGAACATCATAGAAGatcacatttttattcatcGAAAGATCAAccggaaataaaatatttccattgcATATTTTGTGAAACTTCTTGTAGAAAAGAAGATGGTTTGATCAAGCATGTGATCAAGATCCATAATATAAGAAAGATCAATTTGGAAAATcgttattataagaaaatggaGAATTTTGATAACAAACCTTCTTATACTGATCCGTTGCAATGTCCATTTTGTGATTACGTAGCGGAAACGATCTTTGAACTTCcggtacataaaaataaagaacatgataacatgaaaaaatttcaatgtgaaATTTGTGAGAAAcgttattttacaaaaaaaaatttgatgacgCATTTATCGGTGCATGACGATATAAAAAGGCACGTGTGCGAATTTTGCGGGGCAAGTTTCCACAACCGTTCTAACCTCAACGTGCATAAAAGGATGCATACGGGTGAAAAACCGTACAAATGTAAAACGTGCGGGAAATCATTTTCCAcatcaaattcatttaaaaatcatgaagcgttacataaaaatttacaaaatttcgtTTGTGAAATTTgcggaaataaatttaacgcCGCGTTTAATTTGTACAGGCATCAAGAATCGCATCAGAATTTAAGTTTACCGTGTGATGTatgtggaaaaatttttaggacGAAAAAACATTTAAGTTCACATAAAAGAGTTCATTTTGCTGATAGGAATTTAAAGTGCAGGTTTTGTAATAGCACGTTTTATAGGAAATTGCATCTTCAGACGCATGAGATGATTCATACAGGAGAGAAACCGATTGCGTGCCAATATTGTGGGAAATCATTTATACAACTTGCGTCGTTAAAATGGCATTTGAAGAAACAACATGGAATCGAAGGAACttcagttaaaaaataa
- Protein Sequence
- PKIKSDTSAQTGNEDYTCEICKRSFNKKSLLKKHSKIHKLPTHHCSFCSYVAKTPTDLQKHNNKDHCLPNPEDKKKINFHCNMCEKFFKTSKELIYHIRKHKITIRKCTMCDYFPKNYQDLFEHKTKDHPESTKKYQCKICDEFFELIRDLERHLKKIHEITNLEMFCRFCDFIGKDRKDLVEHHRRSHFYSSKDQPEIKYFHCIFCETSCRKEDGLIKHVIKIHNIRKINLENRYYKKMENFDNKPSYTDPLQCPFCDYVAETIFELPVHKNKEHDNMKKFQCEICEKRYFTKKNLMTHLSVHDDIKRHVCEFCGASFHNRSNLNVHKRMHTGEKPYKCKTCGKSFSTSNSFKNHEALHKNLQNFVCEICGNKFNAAFNLYRHQESHQNLSLPCDVCGKIFRTKKHLSSHKRVHFADRNLKCRFCNSTFYRKLHLQTHEMIHTGEKPIACQYCGKSFIQLASLKWHLKKQHGIEGTSVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -