Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1e-14 2.3e-11 43.6 0.1 1 45 67 111 67 111 0.97

2 2 3 6.4e+03 -2.6 0.1 29 39 204 214 204 215 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1e-14	2.3e-11	43.6	0.1	1	45	67	111	67	111	0.97
2	2	3	6.4e+03	-2.6	0.1	29	39	204	214	204	215	0.83

Coding Sequence: catattaaaaatgaacctTCCGAAGACGCACAATCACCATACACAGAACTTTCCATGATGGACGACGATGAAAAACCAAATTTAGGCATACCATCATCTTCACCTCATGGTTATTCGGGAGATATGCGTGGAATGTCGGGAATAGCAACATATGTACCTAGTAATCAAAAACCAGAATGGAAAAGGTACAAACAATACACTAGAGATGATATTATGTCTGCCATTGAAGCCGTAAGAAATGGAATGTCAGCTTTACAAGCAGCGAGATTGTACAAAGTTCCATCACGAACATTATAcgataaagttaaaaaattaggGATCACGACAAGTAGACCCTTTAAACGTGGTAGTAATGGAACTAATGCTTGCTTCCCTTATGGTATTAGTGGAACCAGTTCTCCATTCGGCCATTTAGAATCCGAAGAGCATAGTATGAATAATAATAGCGCTCTTTTGGAAGCGAGTAGCATATTACAGCATGCCCTTGATAGTCGAGGAGGTGATGAAAGGGAAGCTTTGGCAGCTATGGCAGCAGCAGCTGCTGCACATGCCGCGATGTCAAGTCACAACACAAGCCCAAATAACAATAGTCATGCGAGGAGTCCAAGCCCCAGTCCAactcttttaaaatacatgCGGTTACATAGTTTAACACCTTCACCGGCACTGGGGAGCGAGCATAATCATAGTGAAACAAATGGTAGCTCAGAAAGGGAACGTGAAGAAGAAGATGATCAAGTTGAAGATTTATCAGTAGGAAGAAAACAAGAGTCTCGAGTGATTATGCCTCCAATGAGTATGTCCTCAATAATCAAGAAGGAGGAGATGCTAAAAGAAACACTGAGAGAAGAAATGCGTCGAGAGGTAAGCGTGGATAATACAGAATGA
Protein Sequence: HIKNEPSEDAQSPYTELSMMDDDEKPNLGIPSSSPHGYSGDMRGMSGIATYVPSNQKPEWKRYKQYTRDDIMSAIEAVRNGMSALQAARLYKVPSRTLYDKVKKLGITTSRPFKRGSNGTNACFPYGISGTSSPFGHLESEEHSMNNNSALLEASSILQHALDSRGGDEREALAAMAAAAAAHAAMSSHNTSPNNNSHARSPSPSPTLLKYMRLHSLTPSPALGSEHNHSETNGSSEREREEEDDQVEDLSVGRKQESRVIMPPMSMSSIIKKEEMLKETLREEMRREVSVDNTE

Sequence clustering based on sequence similarity using MMseqs2