Cflr011137.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:66749-70369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.77 32 4.6 1.6 1 23 327 351 327 351 0.90 2 10 0.01 0.42 10.6 0.7 1 23 357 380 357 380 0.95 3 10 8.5e-05 0.0036 17.1 0.7 1 23 386 408 386 408 0.97 4 10 1 42 4.3 4.3 1 23 414 436 414 437 0.95 5 10 8.4e-05 0.0035 17.1 0.6 1 23 444 466 444 466 0.96 6 10 0.83 35 4.5 1.2 1 23 472 495 472 495 0.93 7 10 7.5e-06 0.00032 20.4 0.6 1 23 499 521 499 521 0.97 8 10 0.3 13 5.9 3.7 1 20 526 545 526 548 0.94 9 10 2.8e-06 0.00012 21.7 2.1 1 23 555 577 555 577 0.97 10 10 0.72 30 4.7 0.2 3 22 584 604 582 604 0.82
Sequence Information
- Coding Sequence
- ATGGCAGTCCGACCAGACGATGGACTCTCACACTACGTATGTTTACTATGTATAGGAGGCTTGGAATTTATAAGCGATTTCCAAAAACAGTGCCATGATACTCAAAAAAGTTTGCATTCCTCACTGAATGCGTCAAATATAGAAGTGCCAAATAAAAAACCTGAAAGCGATGGAGAATCCGATAAAGAGAATGCTTCTCCCAGCAAAAAATCAACTTCAGATAATCTTccaaatagtaataatatttgtgaTAAACCGTGTGATGAAATTACCATTAATGCGAGTCCACAAATAAGCAATTCAATGATGTTAGATACATTTGATACGGAACAAACAgcaaatattttaatgcaaatAAAGAATTCAAGAAGTTTGGAAACAAAAAGAGTTGGTAGAAATACGCCTAAATACGTGACTGAAAGTACAAAGATAAAcgttaagaataataaaaagatgaaaagtaTCAATAATTCtccaaaaattacaagttctaagacaaaaaatatcaaagaaaatgtTGATCCCAATGATGTCGGATGCAATAATCAAGGAGACGTTATTTTTGAAGGAACGGTAGTTGATTCTTCCGAAGGCACATCAATTATCATGCCTATAAAAATTGATTCGATCAACGCAAATTTGCAACTTGACGATGCAGTGATGGCAGATGTTGCAGATACCGACTCCTTGTACACCCCAACAATTCTCAACGGCTCCAATGACCAATCGTTTTTTTCCAAAGAGCACCTATCAGGcaaaattgatgaaattgaCGGAGCAAAAGTATCTGAATCTTATTTGCAGTTCTCCCCATCTAGTCCATTTAACTCATCAAAACATGAAAAGATGTCGAAATTACTCACAAAAGAACAGAAAGAAGAAATAGAGAAATCTTATGTGATGGACCATTCACTCATTGACGAGGAAAAAATATCTAGTTATATGACGGAACAAATgaacaacaaaagtaaaaaatcctACGTCTGCACTTACCAAAACTGCAATCGGATTTTTGACAGGCGTGATAAGTGTGGAGTACACATTCAAGGACACTTGGATATGAAACCGTACTTGTGCAAACAGTGCAACTTTAAAACAGTTACCGTCTCAAATGTTAAAATCCACATAAATAAAGTTCATCTCAAAGTTAAGCCATATTCGTGCTATTTGTGTCCAAAAACGTACAATACGCATAGCGCTTTGGTGGATCATATTAACGGACACCAGGGCCTGAAACCTTACGAATGTGACTCTTGCTCATTCAAATGCGGAAGCAAACAATCAGTTAGGAGTCACATATTAAATCACCACCAAAAATTAGCCAAAgattTTCCTTGTGACATATGTGGTAAATTATTTTACCGAAAAAACCAAATGCAAACTCACAGAGTGATTCATGACAAAAGCCGCAGATTCAAGTGTAACCTTTGTTCCTCTTATCTCTTGAGCAGAGAGTCCCTTCAGCTGCACATGCAAAGGTCACATCAGAAAAATTATGCCTGTGACAATTGTGAAAAGTCATTCGTCAGCAAAAAGGCATTAAACAATCACAAAATTacTCATTTCCCACCTCGATACAAGTGCATCTATTGCGGCAATTTTTACAAGAGTAAACATACCCTCAGAGATCACACGTGGTATCACCATGAATCCATTTACAAGTACATTTGCTCCAAGTGCggtaaaaaatgtaagtcaaAGGCTAATCTCTCAACGCACATGGCGGTACACAGTAGCATAAGATTCGGTTGCCCTTCTTGTGGAAAAGCTCCCAGTAATCGTTATGACAATTTGAAAGAACACATGAAAAAATGCATAAAGGATAGGCCTGACTTACAACACTATCTAACACGAAGACCGATAAGTTACTCAAAAAACAGAACTGCCAGagttaaagcaaaaaattaa
- Protein Sequence
- MAVRPDDGLSHYVCLLCIGGLEFISDFQKQCHDTQKSLHSSLNASNIEVPNKKPESDGESDKENASPSKKSTSDNLPNSNNICDKPCDEITINASPQISNSMMLDTFDTEQTANILMQIKNSRSLETKRVGRNTPKYVTESTKINVKNNKKMKSINNSPKITSSKTKNIKENVDPNDVGCNNQGDVIFEGTVVDSSEGTSIIMPIKIDSINANLQLDDAVMADVADTDSLYTPTILNGSNDQSFFSKEHLSGKIDEIDGAKVSESYLQFSPSSPFNSSKHEKMSKLLTKEQKEEIEKSYVMDHSLIDEEKISSYMTEQMNNKSKKSYVCTYQNCNRIFDRRDKCGVHIQGHLDMKPYLCKQCNFKTVTVSNVKIHINKVHLKVKPYSCYLCPKTYNTHSALVDHINGHQGLKPYECDSCSFKCGSKQSVRSHILNHHQKLAKDFPCDICGKLFYRKNQMQTHRVIHDKSRRFKCNLCSSYLLSRESLQLHMQRSHQKNYACDNCEKSFVSKKALNNHKITHFPPRYKCIYCGNFYKSKHTLRDHTWYHHESIYKYICSKCGKKCKSKANLSTHMAVHSSIRFGCPSCGKAPSNRYDNLKEHMKKCIKDRPDLQHYLTRRPISYSKNRTARVKAKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -