Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:61543-66044[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0066 0.28 11.1 2.3 1 23 450 472 450 472 0.97

2 9 4.4e-06 0.00018 21.1 0.4 3 23 509 529 507 529 0.97

3 9 0.00035 0.015 15.1 3.5 1 23 535 557 535 557 0.99

4 9 0.00035 0.015 15.2 0.1 3 23 565 586 563 586 0.93

5 9 0.87 37 4.5 1.9 1 23 593 616 593 616 0.97

6 9 0.00019 0.0081 16.0 2.1 1 23 620 642 620 642 0.97

7 9 0.011 0.47 10.4 0.6 3 23 650 670 648 670 0.98

8 9 1.7e-05 0.00071 19.3 1.8 1 23 676 698 676 698 0.97

9 9 4.1e-07 1.7e-05 24.4 0.7 1 23 703 725 703 725 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0066	0.28	11.1	2.3	1	23	450	472	450	472	0.97
2	9	4.4e-06	0.00018	21.1	0.4	3	23	509	529	507	529	0.97
3	9	0.00035	0.015	15.1	3.5	1	23	535	557	535	557	0.99
4	9	0.00035	0.015	15.2	0.1	3	23	565	586	563	586	0.93
5	9	0.87	37	4.5	1.9	1	23	593	616	593	616	0.97
6	9	0.00019	0.0081	16.0	2.1	1	23	620	642	620	642	0.97
7	9	0.011	0.47	10.4	0.6	3	23	650	670	648	670	0.98
8	9	1.7e-05	0.00071	19.3	1.8	1	23	676	698	676	698	0.97
9	9	4.1e-07	1.7e-05	24.4	0.7	1	23	703	725	703	725	0.98

Sequence Information

Coding Sequence: ATGGCCAGTTGCAACGGGGAAGTGGACGACGTCGAAATGGAGACGGAAGAGGATAATGCCTCCCAGGCACTGGATGACGAAAGCGGCAGCAAACTGTGCCGCCTCTGTGGCAAGCTGGAGCTCCAGATCGTCGACCTATTCGGCGAATACAGCACCCAGCGCGACCTCGTCCACAAGATAGAGACGAGGCTCTCCATCCTGATAGATGAGAGTGATCCTCTGCCCAAGGCGATCTGCATACAGTGTGTGGGTAAACTTGAATTTGTGTGCGACTTTCAAGAGGAGTGTCTGCTCATCCAAAACGTGTTACACGATCAGTACAACCTACCATCTTTAAATGTTGATGAACAGAAACCTGAAGAATCAATAATATCAATACCAAGTACTTCAACAATTgctgaaaacaataatattatcagTTTGATAGAAAATGCTGAAATTATTATAAGCAACGAAAGCATAGTTGAACATTGCATCAgcaatttgaataataataacatttgtgataaaaatttgaacCCTCCAGAAAATGATACAAATCTAGATGAAACTAGCTGTGCAAAGGTTTCACCTAAAACAAGAAATCTTAGGAGTCAACTAACAAAAACTGATGTAAAAAACGAAACTCTAGATGTacaaattgaatttgaaaatgatgaaaatttattagcaAGTATTCAGCAACCGGAAATAACAACTACCACACGTAAACTCAGAAGTAGTCTGAGTACAGAATCGTCCGATGCAGACGTTAATGTATCAAAAACCAAACGTGcctctataaaaaataaaagactgaGAAGTCACAACGGTAGTGTTGACAGTACAACGAATTCTAATGAGAGTTCCAACGCAAATCAAATTGTAGGAGAGATAAATAATCAAGAggattacattaataaaatccaaattCCTACCAATACTTTGAACAAAGTATTGTCAGCTATAACTAATACTCCTGGTATAGGTGTTGCTGTGAAAGAGCCTACAAGTCGCAGCAGTGATGTTGAAGATATAAGTTTTACAGTTGAATTGAGTAAGAAACAAGAGACAGATTCCTTGACTGTACTAGCCAAAGTTTTTCCTAATCAAGGATCATGTTTAGTAGACGAATCGATAGTTACATTCCTAGAAGAGGGAACTACAGATGAAGTTAATACTCTTGTTAATAATATTGTCAATCCAGCTGCTTCTAGGGACAATAGTCGCAGTTTGATTGATAAATTGCAAAACGCAGAGGATATCTCTAATAACTCGCTAAATCCAGAGGAACTCTATAAAATGGACGGTCTAGAGATTCATGTCGATGACAATGTTGAACAGATTCATGTGAACAATCAAGTGAGTTACGCTTGTAAAATATGCCGAAAAGTATACGAACGCAAGGACAAGTGCATAGTCCATGTAAAAACACACCTTGGAATCAAGCAGTACATGTGCATTTTGTGTCAAGCGAGATTTGTCTGCAAATCCGACGTTATGAAGCACATACGTTGTTCGCACACCAATCCCCGACCCATCGCATGCTCCAAATGCCCCAAAAGATTCAGATCTAAGTTTGACTTGGCTGAGCACATGAACGTTCACAAGGGCATCAAACCATATCAGTGCGCCGATTGTGATCAAAGCTATCATCACAAAGTTTCGCTACAAATGCATGTTAAATCTCACATGCCTCCTCAAAACTTGGCTTGTGAATACTGCGGAAAAGTCTTCCCTTACCGCACGAGATTACTCAGTCACATTGGCAGCGTTCACATGAAGGACAAGCGTAATTTTCGATGTCGCTTCTGTTACAATCTATACTCGAGCCTAACCGTCTTGAACGAGCACATTAAAACACGGCATACGACCACCTACACCTGCGAGACTTGCACCAAAACTTTCAAAGTAGCTTCCAAGTACAAGACTCACGTGTTGCAGCACAGTAACCCTAAACCATTTGGTTGCAACATTTGCAAAAACCGATACGCTTCCAAGGCCTTTTTAAATGAGCATCTTCTGAAGCACCAAGGTGTCCGCAAGCATGTTTGCCCGAAATGCAATGCTTCGTTCGCGCAGGCAAGTCATTTGGCTGCCCATCGTCACGTTCACGGAGAAAAAAGTTATCCCTGCCCTGAGTGTGGCAAATTGTTCAATCGCCGCGATAACATGAAGGTTCACAGAAGACGGCACTTTATGTCCATCGAGAAAAAAACCAACGTCAAGCAAAGGATTGGTTCCAACGATGAAAATGTGATTGACGCTAATGAGAATTGA
Protein Sequence: MASCNGEVDDVEMETEEDNASQALDDESGSKLCRLCGKLELQIVDLFGEYSTQRDLVHKIETRLSILIDESDPLPKAICIQCVGKLEFVCDFQEECLLIQNVLHDQYNLPSLNVDEQKPEESIISIPSTSTIAENNNIISLIENAEIIISNESIVEHCISNLNNNNICDKNLNPPENDTNLDETSCAKVSPKTRNLRSQLTKTDVKNETLDVQIEFENDENLLASIQQPEITTTTRKLRSSLSTESSDADVNVSKTKRASIKNKRLRSHNGSVDSTTNSNESSNANQIVGEINNQEDYINKIQIPTNTLNKVLSAITNTPGIGVAVKEPTSRSSDVEDISFTVELSKKQETDSLTVLAKVFPNQGSCLVDESIVTFLEEGTTDEVNTLVNNIVNPAASRDNSRSLIDKLQNAEDISNNSLNPEELYKMDGLEIHVDDNVEQIHVNNQVSYACKICRKVYERKDKCIVHVKTHLGIKQYMCILCQARFVCKSDVMKHIRCSHTNPRPIACSKCPKRFRSKFDLAEHMNVHKGIKPYQCADCDQSYHHKVSLQMHVKSHMPPQNLACEYCGKVFPYRTRLLSHIGSVHMKDKRNFRCRFCYNLYSSLTVLNEHIKTRHTTTYTCETCTKTFKVASKYKTHVLQHSNPKPFGCNICKNRYASKAFLNEHLLKHQGVRKHVCPKCNASFAQASHLAAHRHVHGEKSYPCPECGKLFNRRDNMKVHRRRHFMSIEKKTNVKQRIGSNDENVIDANEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00368314;
90% Identity: -
80% Identity: -