Cflr003035.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:1312362-1315471[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 1.1 9.2 0.2 6 21 12 27 6 28 0.86 2 12 4.6 1.9e+02 2.2 0.0 2 20 34 52 33 54 0.89 3 12 0.12 5 7.2 0.2 1 14 235 248 235 249 0.88 4 12 0.0082 0.34 10.8 1.9 1 21 379 399 379 400 0.96 5 12 5.8e-06 0.00024 20.7 1.7 2 23 405 426 404 426 0.98 6 12 1.3e-05 0.00053 19.7 2.4 1 23 439 461 439 461 0.98 7 12 0.32 13 5.8 0.1 1 23 480 501 480 501 0.89 8 12 0.00046 0.019 14.8 0.1 2 23 507 528 506 528 0.95 9 12 0.00011 0.0045 16.8 4.3 1 23 595 617 595 617 0.98 10 12 3.2e-06 0.00013 21.6 4.3 1 23 623 645 623 645 0.98 11 12 0.00012 0.0049 16.7 5.3 1 23 651 673 651 673 0.98 12 12 0.00022 0.0093 15.8 0.4 1 16 679 694 679 695 0.94
Sequence Information
- Coding Sequence
- ATGGGGTCCTTAAGTCTAATATGTCCTATGTGCTGTGGGGAGACCTTTGACAATTCAGAGTCCCTTAAATACCATCTACTTAGCGTGACGGACAACCTGTACTGTCCCGGTTGTTCGTTGAGGATTGACTCCATCACTGCCCTGATTCAACATCTGGATGTTTGTGGAAAAGAAGAAGTAGAAGTGGCAGAGTTGctgcagcaacagcaacaacaagaaGAGCAACAGCAGTCAAAAGAACCGGATGCCAATGGTTTGGAGCGCAACAACGATGACAATGCAGCACAGGGTACCACCTTAGACAATagtttaaaaaatgatgcaGTTAACGAAAGTTTTTTAGCTACTGTTGATGCAGAAGGATTCATGATGGTGGAGGGAAAGACTATTCATGTTGATGAAAACGggGATATACAAGTGGTGGACAaggtaaacgaaaaaaatataaaaagtgaggaaaatgaaaataatagggccaaagaaaaaaaaatttttgaatccaATAATACGTCACAGGTTGTAAGTTCCAACGACGGAATTTCATCGAATGAGTCGagttcttatttattaaatgaaaatgatgGTACACTCATAGATATTACTGAAAATAGTGAAATACAATTGCAATTTGGAGGCTCCAGTTTATCAGATGTAAAAGAAGAACTTAGCCGAACATCACAGGATTCAgaaccgcaaaaactatttatttgcaACACCTGTGGTATGAGTTTTTATGACCCAGAGGATCATATGGACAAATATCATGGTGGTCAAAAGTACGAAGAAGTAAAACCTGATCAAGATGAAATAATACTACCTACCACAACAATAGCTGATAATGTCACTTCTACTGTAAATACACCTGTTATATCTTCTATTGCTACCAGTAGACCATCGAGAGCTGCCAAAAGAAAGCTGGCACAAAAACAACCTTTAAACACTTTAAAAACTGAAGAATGCATTGATAAAGATGGGAGACGATATACGAGAAAAGTTGTCAAAATTGAAAGATTTTGGGACAGGACACCTATTACTTTGTCCACAACTAAAGCTCccatgattgaaaaatttttttccaacgttGAAGGCGTCAagGTAAAAGACAAAAGCGTGATGGTTGCTCCCACGAAAATGTACAGATGCAACCAGTGTTTGGAGCAGTTTCGAAAATTAAGCGATTTTCGAATTCACATATGTTTACGAGGAACAAATCAATGCGATCATTGTGACCAAACTTTCGCTACTCAAAAGGCGTTGCTTAATCATCTTCAAACGCACGACAACAATGACATTGCTCAGAACTCTCAGATGAATTTTGTGTGTAATATTTGTGGTACCGAATTTACCACACATAAGAGTCTTAGATTACATTCACGAATGCACGATCCCGTCAAATCACGTCACGTTGACGCACCTGAAGGCACAGACGAGGATACATTCAAATGCGATGAGTGCGATGCGACGCTCTCTGTATCTTACAGAACAGCTCATATGGCCTTGCACGATGGTATTTCGGTTACATGTACCATATGCAATCGCAAGTTTGATTCGCCAGAAAGTTTAGTGATGCACGCGGCTGTACATGTCGAATCCACTTCTGCTCAGGCAATCTCTACAACCACGATAGCGACAGAGCTTTTCAACGCTGCTACTAAAAATTCCATTGATCCGATTCTTGCGAATGCAGGTGTCAGTGGACCCCTTGTCAGCGGTCCAACCATAGCTGCAGTAGTCGAAGCCGCAGTAGCTGCCGATGATGCTGAGGCCTCTAAGGAGAAGCCGTACATGTGTCAACATTGCGGCCGTCGATTCAGCAGACCACATGAGAAAGTTAAGCACGAGAGGATACACACTGGCGAGAAACCTCACGTCTGCGAgGTTTGTGGCAAAAAATTCAGAGTCTCTTATTGTCTAACGCTGCACATGCGAACGCACACGGGAGTACGGCCTTACCAATGCCAGCACTGTGGCAAACGTTTCAAAGCCTCATCGGTATATAATCACCATTTGTTGACTCACGGCGACAAGCGCGCTTACACCTGTCCTTATTGCCCCAAGACTTTTAAAACAAGGGTACAGTTAGCAGGTCNtatatttattttacatgatcttatattttacaagtttataTAA
- Protein Sequence
- MGSLSLICPMCCGETFDNSESLKYHLLSVTDNLYCPGCSLRIDSITALIQHLDVCGKEEVEVAELLQQQQQQEEQQQSKEPDANGLERNNDDNAAQGTTLDNSLKNDAVNESFLATVDAEGFMMVEGKTIHVDENGDIQVVDKVNEKNIKSEENENNRAKEKKIFESNNTSQVVSSNDGISSNESSSYLLNENDGTLIDITENSEIQLQFGGSSLSDVKEELSRTSQDSEPQKLFICNTCGMSFYDPEDHMDKYHGGQKYEEVKPDQDEIILPTTTIADNVTSTVNTPVISSIATSRPSRAAKRKLAQKQPLNTLKTEECIDKDGRRYTRKVVKIERFWDRTPITLSTTKAPMIEKFFSNVEGVKVKDKSVMVAPTKMYRCNQCLEQFRKLSDFRIHICLRGTNQCDHCDQTFATQKALLNHLQTHDNNDIAQNSQMNFVCNICGTEFTTHKSLRLHSRMHDPVKSRHVDAPEGTDEDTFKCDECDATLSVSYRTAHMALHDGISVTCTICNRKFDSPESLVMHAAVHVESTSAQAISTTTIATELFNAATKNSIDPILANAGVSGPLVSGPTIAAVVEAAVAADDAEASKEKPYMCQHCGRRFSRPHEKVKHERIHTGEKPHVCEVCGKKFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDKRAYTCPYCPKTFKTRVQLAGXIFILHDLIFYKFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -