Cflr004632.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:719325-726671[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0021 0.087 12.7 0.6 1 23 201 224 201 224 0.95
2 9 1.7e-07 7.3e-06 25.5 3.3 1 23 230 252 230 252 0.99
3 9 1.7e-05 0.00069 19.3 0.5 1 23 258 280 258 280 0.98
4 9 0.00095 0.04 13.8 1.8 1 23 286 309 286 309 0.92
5 9 5.5e-06 0.00023 20.8 1.8 1 23 315 337 315 337 0.97
6 9 8.6e-06 0.00036 20.2 1.1 1 23 343 365 343 365 0.98
7 9 0.0024 0.1 12.5 5.2 1 23 371 393 371 393 0.96
8 9 7.2e-08 3e-06 26.7 1.2 1 23 399 421 399 421 0.98
9 9 0.003 0.13 12.2 1.4 2 23 430 451 429 451 0.96

Sequence Information

Coding Sequence
ATGGAGAACAGGCCGGCCCCGTTGAGATCGAGGCGGGTGTGTAGATTCTGCCTGACGGATACCGAGCCGCTCAACTTCATCTACGACCGCGAGCTCAGCAAGCCCTCTAATGTCCCGCTCGCCCTGCAGATCATGTCCTGCGTCGGCATCGAGGTGTACTCTGCAGATGGAATGCCACAAATGATTTGTTTGCACTGTCGTGGCAATTTGGACAGATCTTATAAGTTCAAGCAGCAATGCAAAAAGGCAGATGAAGCCCTACGTGCCTATCCCATATCGGGAGTTCTTCCACGACCGTTTCCACTACTATCCTCCGATTCATCTGAGGGTACTGCCAAGAGAAAGATAGAGATAAGGAGTCCCAATGATCCTAAAAAGCCTCGGTTGGACAATGGCGACAGAGACAGACGAGAAAATGTTCTTGCTGGTCAACGACAGGAAGATATGCGTGCGGAAAAACAGCTGCGCGAAAAAGAGGAACTTCAACAGCGCCACGAGTATTACGAGGAACCGGAGGACATGGTTTACGAGGGTGAACACGATGCTAACgctaaagatgatgatgacgagtCAAAGCTCGAACCTGGCGAGATCCGCGTGCATGCTTGTAATCAGTGCGAACGCACTTTTCCTCTGCTCCAATCGCTTCAGCTTCACATGGAACGAGCTCACGGACGGGATCGTGAATACAAGTGCACTGAGTGCGATCGTTCCTTTTACTCCAAGTATGACCTGACCAAGCACATGACAACTCATAACGAGGAAAAACCCTATTCGTGTCAAATTTGCAACAGGCAGTTTTCGCGAGCGAATCTACTCGCACGTCACGAAAAGATTCATCAGGAAGAGTTGAAGTACTCTTGCGTCCATTGTGATCGCTCTTTCTTCACTCGGGAGGATCTTGATAAGCATGAGGAAAACATGCACACCGCTGTTAAGCCTTACCAGTGCAACATCTGCAACAAGCAATTTACTTACAAACAAAgtCTTGAGCGACACGAAATGCTGCATAGCGAGGATAAGTCGTTTGTGTGCGAGTACTGCAAAGAGGCTTTCCGCACAAGCACCAAGCTCGCTCGTCACTTGACCACTCATGCTGGACATCGTCCGTATTTGTGCAAGCTATGCCCCCGCTCGTTCCTTCTTTCGCACCACTTGACGCGTCACATGCGCAGTCATTTAGTCGAAAAGCGACACCAGTGCGAGGACTGCGGCAAGGCTTTCAAGCGCAAAGAGAGCCTCGAAGTTCATCAACTTACGCACATCAAGCGGCCAGGTATGGGCTTGATATGCAATGTTTGCAAGGAGTCATGTCGTAATAGGGCCGACTACGTTACTCACATCAAACAACACATCGAGGCGGGTGAAAAGATGGGACCCGACGGATTGCCCCCAGAGAACAAGGAAAAGCTCGCGGATACcgaagaagaggaggaagaagaagaagaagaacagtactctgatgatgacgacgacgactacgAGCCACCCTCGTCTTATGTGTATCAGgctaaaaaaatgcaaagaggAGTGAATAAGTCAAAGACTGctgaagatgaagaagaagagacACTGGATCAGGATGAGGAGAATAAGAAGGAGCAAATTGTTTATGTGAGAGGCAAAGATGGCAACGTTGTGAAGAAAACGATAAAAACCCTAATGCCGATACAGCGTCGATCAGAGCCAGCAGAAGCTGTAAAGCCGAAATCTGCCTCTACTCCTCAAGTCATAAGCACGAAGCAAATAAAGGAAGAAGGTCTGTCTCAGCAAAAGGGCAGAGTGGATGAGACCGAAGCTCAGGTGCAGAAAATTGTTGCTTCCGTCTTCAAGGAGCACAAGATACCGCTCAAGAACCAAAGTGCTGAGCAGATCAAAGAATCGCAACAAGTTAAGCAAGTAACCATGCCAACTGtcatgaaagaagaaaaaatagattcATCCTCGGCATCCACTTCTCAAAATACCGTCAAGGTGATTAAGAGAATTATAGTTAAACGGCCTGCTGGATCAGACATGTCGGGTGCTATTACAGGTCCCATTCGCGATTTTATTCAAGAACCAACAACTCCAACTACTTCTCCACAACAGTCCGTGGCTACCCCGTCTACATCCGGCACTAAGtcaacgaaACGGTACATCCTGCGTAGAATAATCCGTCAAGGCAACATGGAGCGTGAGGTAATCATGCACGCTGACGGTACACCTGTGGATCCTGCCGAGCTAGCAAAATTACCCGCTGCAAATGTAGTGAAACGCCTCGTAATGAAAAAGCCAGTAGGGAAGAATCAAAACATTGATGATTTATTGCTTGAATCTCCGGACAcgaaacaattattaaaactgGTTGAGAGTCAAGATAACGCTGCGAAATCAGTGCCCACTCCTATGACTCCGATTCGCCGAGTTGAGCAGCAGCCGCAAGTAAAACAAGTGCAAGTACAGCAACAGAAACAGATGCAACAGCAGCAAAAACAACCGCCTCATCAACAGCAACAAACGCAGCagaaacagcagcaacaacaactacagcagcaacaacaaccaCAACAATCGCGGCAACAATCTCAACAACAACGGCCAAAAGAAACAAGTGGAAACAGCGATCAATCAAAAGAGAGGATCGAAGCGTTGGAGAAAGCACTGAAGCAACGTGATTCAAAAATCGCAGAACTCGAAGCGCAAAATCAGCAACATGCTCAACAGCACGAGTACGATGCTGACGAGATGTTGCCGGAGCgaaacgatgatgacgatgatgacgagcAGGCGCTACCATTGAAGCGTGTCTTTGTCAAGCGCAAGCAGTGCATTTACGATGAGGAGCGCGAGTATAATGATGACGCGTCCTATCGTAAAGAAGGCGCTGATGAGGAAGAAATAGCTACTGCAATTTCAAGCCAGGAAGAGTCGAAGGTCGAGGGAGTGCTGCAAACCTCAACGAATTTCGAGGATAAAGATGAATTATCGATCGAGGATGCTAAGATCATAATCATCAAGCCCGAAGAAAGCCAGCATGATGTCGATGAAATGAGCAGAGAGCTGTGTAACATTCTCGACTCGACGGACTCTGTCGTCAAAATGCAGGAAACTGTCTTGAATAATTTAACACGAATAACAACGGTTAACGAGGCGTCATCGCTCAAAACTTTTGCTGAAGTCGTTGAGGAGGCTACGACGCAGGAAGAGTCGAAGCCCGAAGTGCCGACGTCAACTATGCCAGAAGAGCAAATGGACCAAGAAATCGTCATCAGTTCAGGATTGGAGCAGCCTCATGAACAGgtaGTAGAGGAAGTGACTGAACATCAGGACCCTCAActcaaaattattgtaactCATCATGACCTCGAAGAAGCGCAAGTAGAAGAAGTGAAAATGGATTATGAAGGCTCTAATGTGGAAACAAGCCAAACTGAAGGCGTGGATGAAAGCGAGAACGTCGAAAGGTCAGAGGCTGAATTGTCTGAACTGAATACGCAAGTACTGTCGGACACGAATGACATATTTGAGGCATCTGTGACGGAAATGGAAGTAGACAAAAGCCAAGAACAGTCAAACGTTAACGAGTCGGTTATTGAATTGTCTGTTGCAAACGATACAATCAATTTGAACGAGACCACGGACAGTAGAGACAGTTTAGAAGATAAATTGTCGCAAATGGAAGGCTAA
Protein Sequence
MENRPAPLRSRRVCRFCLTDTEPLNFIYDRELSKPSNVPLALQIMSCVGIEVYSADGMPQMICLHCRGNLDRSYKFKQQCKKADEALRAYPISGVLPRPFPLLSSDSSEGTAKRKIEIRSPNDPKKPRLDNGDRDRRENVLAGQRQEDMRAEKQLREKEELQQRHEYYEEPEDMVYEGEHDANAKDDDDESKLEPGEIRVHACNQCERTFPLLQSLQLHMERAHGRDREYKCTECDRSFYSKYDLTKHMTTHNEEKPYSCQICNRQFSRANLLARHEKIHQEELKYSCVHCDRSFFTREDLDKHEENMHTAVKPYQCNICNKQFTYKQSLERHEMLHSEDKSFVCEYCKEAFRTSTKLARHLTTHAGHRPYLCKLCPRSFLLSHHLTRHMRSHLVEKRHQCEDCGKAFKRKESLEVHQLTHIKRPGMGLICNVCKESCRNRADYVTHIKQHIEAGEKMGPDGLPPENKEKLADTEEEEEEEEEEQYSDDDDDDYEPPSSYVYQAKKMQRGVNKSKTAEDEEEETLDQDEENKKEQIVYVRGKDGNVVKKTIKTLMPIQRRSEPAEAVKPKSASTPQVISTKQIKEEGLSQQKGRVDETEAQVQKIVASVFKEHKIPLKNQSAEQIKESQQVKQVTMPTVMKEEKIDSSSASTSQNTVKVIKRIIVKRPAGSDMSGAITGPIRDFIQEPTTPTTSPQQSVATPSTSGTKSTKRYILRRIIRQGNMEREVIMHADGTPVDPAELAKLPAANVVKRLVMKKPVGKNQNIDDLLLESPDTKQLLKLVESQDNAAKSVPTPMTPIRRVEQQPQVKQVQVQQQKQMQQQQKQPPHQQQQTQQKQQQQQLQQQQQPQQSRQQSQQQRPKETSGNSDQSKERIEALEKALKQRDSKIAELEAQNQQHAQQHEYDADEMLPERNDDDDDDEQALPLKRVFVKRKQCIYDEEREYNDDASYRKEGADEEEIATAISSQEESKVEGVLQTSTNFEDKDELSIEDAKIIIIKPEESQHDVDEMSRELCNILDSTDSVVKMQETVLNNLTRITTVNEASSLKTFAEVVEEATTQEESKPEVPTSTMPEEQMDQEIVISSGLEQPHEQVVEEVTEHQDPQLKIIVTHHDLEEAQVEEVKMDYEGSNVETSQTEGVDESENVERSEAELSELNTQVLSDTNDIFEASVTEMEVDKSQEQSNVNESVIELSVANDTINLNETTDSRDSLEDKLSQMEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-