Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:911596-915703[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.097 4.1 7.5 0.1 1 23 319 341 319 341 0.95

2 12 0.026 1.1 9.3 1.4 2 21 344 363 343 364 0.93

3 12 9.7e-07 4e-05 23.2 1.6 2 23 396 417 395 417 0.97

4 12 8e-05 0.0033 17.2 4.7 1 23 423 445 423 445 0.97

5 12 0.0003 0.012 15.4 2.4 1 23 451 473 451 473 0.98

6 12 0.00063 0.026 14.4 2.4 1 23 479 501 479 501 0.98

7 12 0.00027 0.011 15.5 1.7 1 23 507 529 507 529 0.97

8 12 2e-05 0.00085 19.0 0.9 1 23 537 559 537 559 0.97

9 12 0.027 1.1 9.2 1.5 2 23 566 587 565 587 0.92

10 12 0.00049 0.021 14.7 3.8 1 23 593 615 593 615 0.98

11 12 1.3e-05 0.00055 19.6 0.6 1 23 621 643 621 643 0.98

12 12 2.5e-06 0.00011 21.9 1.4 1 23 649 671 649 671 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.097	4.1	7.5	0.1	1	23	319	341	319	341	0.95
2	12	0.026	1.1	9.3	1.4	2	21	344	363	343	364	0.93
3	12	9.7e-07	4e-05	23.2	1.6	2	23	396	417	395	417	0.97
4	12	8e-05	0.0033	17.2	4.7	1	23	423	445	423	445	0.97
5	12	0.0003	0.012	15.4	2.4	1	23	451	473	451	473	0.98
6	12	0.00063	0.026	14.4	2.4	1	23	479	501	479	501	0.98
7	12	0.00027	0.011	15.5	1.7	1	23	507	529	507	529	0.97
8	12	2e-05	0.00085	19.0	0.9	1	23	537	559	537	559	0.97
9	12	0.027	1.1	9.2	1.5	2	23	566	587	565	587	0.92
10	12	0.00049	0.021	14.7	3.8	1	23	593	615	593	615	0.98
11	12	1.3e-05	0.00055	19.6	0.6	1	23	621	643	621	643	0.98
12	12	2.5e-06	0.00011	21.9	1.4	1	23	649	671	649	671	0.98

Sequence Information

Coding Sequence: ATGACTGCTGTCAcagaattgaaattaaattacctGTGCCGATTTTGTGCCTCCAAAATAGATATTCTCATGGGTTTGCCCATTTTCGAAGAGAACGAACAAAGTAGGagtcttaataaaaaaatatctacttgtCTGCCAGTTAAAGTATCATCAACTGATCAGTTGCCAAAAATAATATGTGGCGAGTGTGCCTTCAAAGTAGAtgaattgtttgattttcatgaaaaagtaTTACAGACTGAGAACCTGTTCACTCAAATGATAAAAGCCTTGCCAAAAGGTGTAAACTGTTTggataaaatattgataactgAAATCCAAGGGAATTTGGATAgacaaattttgcaaaattcaaatgccataaaacaaaatattcaaagtGATATTCTTACTATACCTGTGTTAAATAGTATTGTACCTACTAATGGACGACAAGTCATACAGACGGGAATCATCAGAGATGATAATGAGGTGGATGTTTTTCAATTAGACAAGGAAACTGCAAGAATGTTTGATGAGCACATGAGACAGctcaAAGTGACGAACCAGGATATTACAATGCATCTGGATAACAACATTTCGATAAACTTAGTGAACAGTCACTTGGACCCAATAGACATTAATAGTTTCGTAACGTCATTAGCCTCTAACTCGTCCCAAACAAATGATGAACAAATCACAGATAACTGCAGGGACatagaaattaatttgaaagaaaaaaacatcccAGAGAATATTGGCAAGCATCAATCCAGAGAGAACAATGAGCAGGATAATATTTGCAATGAAGCTTCAATTAATAATGGCTTGGTGCCCTCGTTTGAAATACCGTCAGTGAGCCAGGATGACAAAATCGATGATCCACTTGTTCAATACACTAAAAGCGCCAAAGACGATCTCATTGCGAGCGTGATTAATAATCCATCAGTTGATCAGGCCAGCAACACTTGGTACGTCTGTCCGTTTTGCAATGAAGTAGCGGCAGAAGCAAAGTATTTGACTGAACATTTCGTGAAACACTTTTGTTGCTGTCCCAAGTGCGAATTATATTTCACGAGCGTGGACGCATTGAATCTCCATATTCAGAGCTGTCTTGATCTACAAAACAACGCAGATGTCGAAAATTCGAAAAATGTAGAGAAGAAAGTTACAGAACATTCGCAACCTAAAGGGACTCCAAAAGTCTGCTCGATATGTGGTAAACAGTACAGGACGAATTACAAACTGCAGGAACACATGCGAAAGCACACTGGCGAGAAGCCGTTCCATTGCACACATTGCAACAAATCATTTAGGAGCAAGATCGGCTTGGCTCAGCACACAGCCACTCACACAGGTCAGTTTGCGTATAGCTGCTCTACTTGTGGCAAAGGATTTCAGTGTAAAAGTTACCTGATCGTTCATCAACGAGTGCATTCAGACGCCAAGCCATATTCCTGTACTACCTGCAGTCAAAACTTTAAAACCAAGCAGTCACTGTTAGATCACGAAAATCGGCATGCGGGCGTTAAACCGTACACATGCGAGATATGCGGGAgaagttttattacaaaaggtCTGTGTAAGAGTCACGAGAAAATACATTCGGGTCTTGACAATCGACAATATCCGTGTCATATTTGCAACAGATATTTTGTGAGTAAAAGTTACCTGGCAACACATGCGCTCATACACACAGGTGACAAACCATATCTCTGCGAGTGTTGTGGTAAAGGTTTTCTCACAAAGATGGATTTAAAGATCCATATGACGATGCACACAGgcgagaaaaattttaaatgcgaTATTTGCTCGAAAGACTTTGCGCGTCGCTCGGCCCTACGATGCCACAAACGATCTCATACCGGAGAACGACCTTACCGCTGTGAAATATGTGGTAAAACCTTCACACAATTCAGTCCTATGGCAATACATAAACGATTACATACAGGAGAACGACCTTACGAGTGTGATCTATGTGGAAAATCGTTTGTTTCCCGATCAACAATGATGAGCCATAGAAAAAAACATGACAATGCAAACGAAGTTCCACTTGACgtgaaaaagttcaaaaaacagAATTCACAGGAACAAATGAAGACTAAACTGCCTCAGGATGATGAATTTACAGACAAGGTTCTTAGCTACAACGACGATAGTAAAgagtaa
Protein Sequence: MTAVTELKLNYLCRFCASKIDILMGLPIFEENEQSRSLNKKISTCLPVKVSSTDQLPKIICGECAFKVDELFDFHEKVLQTENLFTQMIKALPKGVNCLDKILITEIQGNLDRQILQNSNAIKQNIQSDILTIPVLNSIVPTNGRQVIQTGIIRDDNEVDVFQLDKETARMFDEHMRQLKVTNQDITMHLDNNISINLVNSHLDPIDINSFVTSLASNSSQTNDEQITDNCRDIEINLKEKNIPENIGKHQSRENNEQDNICNEASINNGLVPSFEIPSVSQDDKIDDPLVQYTKSAKDDLIASVINNPSVDQASNTWYVCPFCNEVAAEAKYLTEHFVKHFCCCPKCELYFTSVDALNLHIQSCLDLQNNADVENSKNVEKKVTEHSQPKGTPKVCSICGKQYRTNYKLQEHMRKHTGEKPFHCTHCNKSFRSKIGLAQHTATHTGQFAYSCSTCGKGFQCKSYLIVHQRVHSDAKPYSCTTCSQNFKTKQSLLDHENRHAGVKPYTCEICGRSFITKGLCKSHEKIHSGLDNRQYPCHICNRYFVSKSYLATHALIHTGDKPYLCECCGKGFLTKMDLKIHMTMHTGEKNFKCDICSKDFARRSALRCHKRSHTGERPYRCEICGKTFTQFSPMAIHKRLHTGERPYECDLCGKSFVSRSTMMSHRKKHDNANEVPLDVKKFKKQNSQEQMKTKLPQDDEFTDKVLSYNDDSKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -