Cflr009887.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:4363603-4366003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.24 10 6.2 3.7 3 23 66 87 65 87 0.96 2 13 0.00059 0.025 14.4 4.7 1 23 89 112 89 112 0.96 3 13 0.0096 0.4 10.6 4.4 1 23 114 137 114 137 0.96 4 13 9.7e-06 0.00041 20.1 0.7 1 23 139 162 139 162 0.96 5 13 0.0023 0.098 12.5 0.8 1 23 164 187 164 187 0.93 6 13 1.3e-06 5.4e-05 22.8 0.3 1 23 189 212 189 212 0.97 7 13 0.00066 0.028 14.3 0.4 1 23 214 237 214 237 0.91 8 13 7e-05 0.0029 17.3 1.0 1 23 239 262 239 262 0.95 9 13 2e-05 0.00084 19.1 0.5 1 23 264 287 264 287 0.97 10 13 3e-05 0.0012 18.5 0.9 1 23 289 312 289 312 0.94 11 13 3.9e-06 0.00016 21.3 0.2 1 23 336 359 336 359 0.97 12 13 3e-05 0.0013 18.5 0.4 1 23 361 384 361 384 0.97 13 13 0.0001 0.0044 16.8 1.8 1 21 386 406 386 409 0.94
Sequence Information
- Coding Sequence
- ATGTCCAGAAATCCGCCAAACCCTAACGCTTGCAATATATGCGGGAAAACTAATTCTAATTCAAAACACTCCAAAAGTCATTGCTGTATTCACTCAGCTGAAGAGTCATCCTGCCACGTCGCCTCGTGTTCAAAATCCAACATGGTTGAAAGCACTTCCACGGCACGTCCATCCATTCAATACAATACCAATCATTGCCTTGtgtgcttgaaaaaatttgtttgtagtGAAGATCTTACAATTCACATGAATTCCAAGCACAACTATTCCTGTAGCGTGTGCTTTCAAACTTTCACCCACAGAAATGGTCTTACAAGGCATTTTAACTCCTACCACATCCATCGCTGCAACTTGTGCTCTGAAATTTTCTACCTGAAAAAGGATCTCTCCCATCATATGGACTCCAAACACAAACACCCTTGCACCGTGTGCTCTGCAACTTTTTACCAAGAGGATGATCTCACGAGGCACATGAACTCCGAACACAACCACCCTTGCACACTatgttccaaatttttttacgaagaaGAGGATCTCTCGTGGCATATGGAGTTTGAACATAAATACCCATGCACCGTGTGTTCTGCAACTTTTTACCAAGAAGATAATCTCACGAGGCACATGAACTCCGAGCACAATCACCCCTGCACCGAATGTTCCGAAACTTTTGTCCGCGACAGTGATCTTATGGAACACGTTTACCTTCAGCACTGTTATCATTGCACCATGTGCTCGCAAACATTTAGTCAAGTTAGCGATCTCACGTGGCATGTGGACTCGGAGCACAACCATCGCTGTACCGCGTGTTCCGCAGTTTTTGTCCGAGAGAGCGATCTCACGGCGCATATGAATACTCAGCACAATCACCAATGCATCGTGTGCTCACAAAGTTTTAGCCGAAGTAGTGATCTTACGTGGCATATAAATTCCGAACACATGCCTGAAACTTTGGAATCTTTCGTCCAAGACTGTCATATCACAGACCTCATGAACTTTCCGCCCAACTATCAATGCACCGTGTGCTCACAAAATTTTACCCAAAGTGGTGATCTTATATGGCACATGGATTCCGAGCACAACCACAGATGTACCGTGTGTTCCGCCGTTTTTGTCCTAGAGAGCGATCTCACGGCGCATATGAATACTCAGCACATTCACCACTGCACCGTGTGCTCGCAAACTTTTTACCAAAGTAGTGACTTGATATGGCATATGAATCCCAATCACAACCAATACTGCACAGTATGTTTAGAATATTTTAACCTTGAATag
- Protein Sequence
- MSRNPPNPNACNICGKTNSNSKHSKSHCCIHSAEESSCHVASCSKSNMVESTSTARPSIQYNTNHCLVCLKKFVCSEDLTIHMNSKHNYSCSVCFQTFTHRNGLTRHFNSYHIHRCNLCSEIFYLKKDLSHHMDSKHKHPCTVCSATFYQEDDLTRHMNSEHNHPCTLCSKFFYEEEDLSWHMEFEHKYPCTVCSATFYQEDNLTRHMNSEHNHPCTECSETFVRDSDLMEHVYLQHCYHCTMCSQTFSQVSDLTWHVDSEHNHRCTACSAVFVRESDLTAHMNTQHNHQCIVCSQSFSRSSDLTWHINSEHMPETLESFVQDCHITDLMNFPPNYQCTVCSQNFTQSGDLIWHMDSEHNHRCTVCSAVFVLESDLTAHMNTQHIHHCTVCSQTFYQSSDLIWHMNPNHNQYCTVCLEYFNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -