Cflr006123.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:1948103-1951172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1 87 3.3 0.0 3 21 116 133 114 134 0.91 2 14 0.026 1.1 9.3 3.7 1 20 140 159 140 162 0.95 3 14 0.00096 0.04 13.8 0.6 1 23 168 191 168 191 0.93 4 14 7e-06 0.00029 20.5 0.9 1 23 197 219 197 219 0.98 5 14 3.7e-06 0.00016 21.4 0.4 1 23 340 362 340 362 0.98 6 14 0.0035 0.15 12.0 0.3 2 20 372 390 371 392 0.94 7 14 0.0001 0.0043 16.8 2.3 1 20 410 429 410 432 0.92 8 14 0.0071 0.3 11.0 0.2 1 23 437 460 437 460 0.96 9 14 2.2e-06 9.1e-05 22.1 0.3 1 23 466 488 466 488 0.98 10 14 0.00094 0.039 13.8 5.4 1 23 495 517 495 517 0.98 11 14 0.00043 0.018 14.9 0.4 3 23 525 545 523 545 0.97 12 14 2e-05 0.00085 19.0 0.5 1 23 551 574 551 574 0.96 13 14 0.09 3.8 7.6 0.1 1 23 588 610 588 610 0.97 14 14 0.0071 0.3 11.0 0.1 2 23 878 899 877 899 0.96
Sequence Information
- Coding Sequence
- ATGGATACCAGCGAGGGAGAGCACTACGTCACATTCTCGCTCGACGACGGTATACAGAACAACGTTTCGCACGAGGAGATATGCGAGCCAATCGACGAAGAATGCGTGCTGACAGAGAACATGACCGAAGTAACAATGGAGGAGGTGAGCCAGGAGGATTTGGTCGAGACGCCAATGGCTGTGGAAATAATAACAGAGAATTCGGAAGATGGTGAAGAACAGGGTGCCTTCATTTACATAAAGAAAGAGGCTTCCCAGCAGTTTACGACGGGCGACGAGTCTATGGCGGTCGAGGCTCTGCGACAGCTTGGTGGCATGTATTGCTTCGAAGAGAAAAAGATTGCCTGTCCAAGTTGCAAGAATACCTTTGCCCCTGGAGAATTGGCCAAGCATCAGAACTCGTGTTCGTCCACCAAACACATTTGCACCTTCTGTCGCGAAAAGTTCGAGAGAAAGATCGATCTGACCAATCACATGGTGTGCCACCAGGTTGACAGACCCCATGCGTGCAGAACATGCGGAAATCTGTTCAAGTCCAAAGCTAGCTTGCAGGCACACATGTTGGAGGTTCATCAGGTTGACAGGCCTCACAAGTGCACCGTTTGCGGAGCTGATTTTCAGAGGCCATCCAGTTTGTCCAATCACATGAAAATTCACAGCTACGTCGCAGGCAGAGCACTGATGCAAGCCAATCACGTCGTTGCCAGTATTGAAACTGTCAAGGAGGTTTCTGACAATTACGATAGTTCTATTTTGACCACTGTTCAATCCATTCAAAACATTGATTTGCCTCAGGGTCAATGGACAGCTGTGCAGATCGCTACAGATCAGGGGGACATTGAGGGCCTTGCTATACAACAGGACAAAATTGATTCTGTGCAAGAGTACGCTGTACTACCCAGTGGAGAAGTTACCCAGCTCACAGAGTATACTACACAAAATTCTATGGAAGATGAAAATTTGGATAACGAGTGTGAAAAgactttcataaaaattgactTGCCAGGAAATAAAGGGCACACTTGCAGTATATGTGGCGTATCGTTTGCGCGTGCAGCTTCTTTAACTATGCATGTGAAAACTCATCCAAAAGGTGAATCTGTTTTGCCAGTCGAATGCGAATACTGCGACAAACAATTTCAAGATGCCAACTGCTTGGCAAATCACCAATCTGGctgtacaaagaaaataatgaagaatTCAGGGTCTAAGGAGAAATGGGGCAAGCATGCGTGCTCAGACTGTGGCAAAACATTCACgacgaaacaaaaaatgttcAGGCATCAGTGGATCCACAggaaaaaaacgttttcctGCGAAGTTTGCGGCTCCCAGTTTGAAAAACAGCCACAACTCGACGCGCACAGGCTATCTTCTCATCCGGCGGGCACGCCTTTTACTTGTCAAGAATGTGGCAAAAGTTTCGTGTCTCGTCAGGGTCTTTGGGAACACGGCAGGACGCACGCGGGCAGTCCGGCCCATTTTCACTGCGACGTATGCTCCAAGACCTTCTCTTCGAGGCAAGGGTATTTAATACACCACCGGACTCACACTGGGGAACGTCCGTATGGTTGCAAATTTTGTTGGAAGGCTTTCAGGGACGGTGGTACGTTGAGGAAACACGAGAGAATACACACTGGTGAGAGGCCGCACGTTTGTCCACTGTGTCAAAAGTCGTTTAATCAAAAGGTCGTTTTGCGCGAACACATCAGGTGGGTTCACGCTGCTGGGAAAAATGAGCCTGAACTCGCAGGTCCACCTTTTCCGTGTCCGTTGTGTGAAATCCTCACGCAGGATCGAGAGGAACTGTGTGCTCATATCGTCAAACACTCGGATCAAATGATCGCAGAGGCCAAAGCGAAATCTAACACTGTGACTGTTAAGGTGAAATCTCCgccgaaaaagaaaataaaaatgtcggaagggaagcaaaaaaaagcaggACAGCCAAAAACAgcgaaaacaaaaacgaaaactGCGAAAACGAAAGCACAAACAGTGGAAGAGCGAGTTGTTACCGCTGAAGAGCAGCAGGAAGCACTACTTTCCATCTCCGACCACATAGATCCTTCCGCGGAGCCGCAagatacttattttattgtaaaaaatgagtATGACAATGAAGTGTGCATAAAAGCGTACGCAAAACTAAGCGATGTTACTCAACTGCAAGGTTCGAGTAGATCGATTAATTTGATAACGATTGCAAATAAGTCTAATGAGAGCCCAGAAAAAAGTAGGGAGGAAAATGACGGTGACGTCAACAATGAGGCTAATGTAAATACTATGCGTTTGATACCTATAAGTACAGAATCAGGGGAAACAGTTTACATTGCTGAGAAGCAAAATAACACTTTGCACCTAATATCGAAACAAAATGAAAGTTTACCGGTTTTAGCATTACCAAATCCAGAtactgatgaaaatttttccaacgaAATATCGAACATGAGTAACAACGAGTCGTCGATTGAAATCAATATCAACAATTTACAATCAGCACCAGAAGAAAGTGAGGAAGAGCACACGGAAACTATGATTATTGAACCTGTAATGATAATTAAGGAGGAAGTTTCCGGAAATGAACAGATGACGAATGAAAGTGACAGTGAAAATGAAAGTGAAGAAATGGTGTGTGGCATATGTGGGCATGAATTCGGTGATAAAAATGTTCTAATGGAGCATGTAAAAATTCacatataa
- Protein Sequence
- MDTSEGEHYVTFSLDDGIQNNVSHEEICEPIDEECVLTENMTEVTMEEVSQEDLVETPMAVEIITENSEDGEEQGAFIYIKKEASQQFTTGDESMAVEALRQLGGMYCFEEKKIACPSCKNTFAPGELAKHQNSCSSTKHICTFCREKFERKIDLTNHMVCHQVDRPHACRTCGNLFKSKASLQAHMLEVHQVDRPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQANHVVASIETVKEVSDNYDSSILTTVQSIQNIDLPQGQWTAVQIATDQGDIEGLAIQQDKIDSVQEYAVLPSGEVTQLTEYTTQNSMEDENLDNECEKTFIKIDLPGNKGHTCSICGVSFARAASLTMHVKTHPKGESVLPVECEYCDKQFQDANCLANHQSGCTKKIMKNSGSKEKWGKHACSDCGKTFTTKQKMFRHQWIHRKKTFSCEVCGSQFEKQPQLDAHRLSSHPAGTPFTCQECGKSFVSRQGLWEHGRTHAGSPAHFHCDVCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCQKSFNQKVVLREHIRWVHAAGKNEPELAGPPFPCPLCEILTQDREELCAHIVKHSDQMIAEAKAKSNTVTVKVKSPPKKKIKMSEGKQKKAGQPKTAKTKTKTAKTKAQTVEERVVTAEEQQEALLSISDHIDPSAEPQDTYFIVKNEYDNEVCIKAYAKLSDVTQLQGSSRSINLITIANKSNESPEKSREENDGDVNNEANVNTMRLIPISTESGETVYIAEKQNNTLHLISKQNESLPVLALPNPDTDENFSNEISNMSNNESSIEININNLQSAPEESEEEHTETMIIEPVMIIKEEVSGNEQMTNESDSENESEEMVCGICGHEFGDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -