Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:218377-223739[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.5 2.3e+02 1.9 0.7 2 23 307 328 306 328 0.90

2 16 0.12 4.9 7.2 2.1 2 23 375 396 375 398 0.89

3 16 0.00013 0.0055 16.5 2.2 1 23 504 526 504 526 0.98

4 16 0.0072 0.3 11.0 0.5 1 21 547 567 547 571 0.90

5 16 0.0067 0.28 11.1 3.1 3 23 656 676 654 676 0.95

6 16 7.8e-06 0.00032 20.4 2.3 1 23 709 731 709 731 0.98

7 16 0.0016 0.066 13.1 1.3 1 20 736 755 736 757 0.94

8 16 0.015 0.62 10.0 0.9 2 23 768 789 768 789 0.98

9 16 2.5e-05 0.0011 18.7 0.9 2 23 827 848 826 848 0.97

10 16 9.5e-05 0.004 16.9 2.1 1 23 853 875 853 875 0.94

11 16 2.6e-05 0.0011 18.7 3.0 1 23 881 903 881 903 0.99

12 16 8.8e-06 0.00037 20.2 0.4 1 23 921 943 921 943 0.95

13 16 4.3e-07 1.8e-05 24.3 0.6 1 23 949 971 949 971 0.99

14 16 4.5e-05 0.0019 17.9 0.2 1 23 977 999 977 999 0.97

15 16 0.0032 0.13 12.1 6.4 1 23 1005 1027 1005 1027 0.96

16 16 0.08 3.4 7.7 3.1 1 21 1033 1053 1033 1058 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.5	2.3e+02	1.9	0.7	2	23	307	328	306	328	0.90
2	16	0.12	4.9	7.2	2.1	2	23	375	396	375	398	0.89
3	16	0.00013	0.0055	16.5	2.2	1	23	504	526	504	526	0.98
4	16	0.0072	0.3	11.0	0.5	1	21	547	567	547	571	0.90
5	16	0.0067	0.28	11.1	3.1	3	23	656	676	654	676	0.95
6	16	7.8e-06	0.00032	20.4	2.3	1	23	709	731	709	731	0.98
7	16	0.0016	0.066	13.1	1.3	1	20	736	755	736	757	0.94
8	16	0.015	0.62	10.0	0.9	2	23	768	789	768	789	0.98
9	16	2.5e-05	0.0011	18.7	0.9	2	23	827	848	826	848	0.97
10	16	9.5e-05	0.004	16.9	2.1	1	23	853	875	853	875	0.94
11	16	2.6e-05	0.0011	18.7	3.0	1	23	881	903	881	903	0.99
12	16	8.8e-06	0.00037	20.2	0.4	1	23	921	943	921	943	0.95
13	16	4.3e-07	1.8e-05	24.3	0.6	1	23	949	971	949	971	0.99
14	16	4.5e-05	0.0019	17.9	0.2	1	23	977	999	977	999	0.97
15	16	0.0032	0.13	12.1	6.4	1	23	1005	1027	1005	1027	0.96
16	16	0.08	3.4	7.7	3.1	1	21	1033	1053	1033	1058	0.89

Sequence Information

Coding Sequence: ATGTCGAAATTCGAAGATACATCTGTTTATACAACAGATCATGGTGAGATTCCTCAAATGGACGTGTGTCGTGTGTGTCTCGAAGAAGCTCCCACTATGGTGGATCTGTTTTACAAGGACAGCGTGCTGTCACTTGCTGACAGGCTGATGTTTTTGTCGAACGTTAAGgtTGCACCAGATGATGGGTTACCTTCGCAAATATGTTGTGAATGTGGAGATAAGCTTGATTTATCATACAAATTCAAGCTACAAGTGGAAGAGTCACATGCgattctgaaagaaaaatttgactcttttaatgtaaaacaggaatttttttttcatgatgctGATGTTAATATATCTTGTGACGAAAATGTGGAAGACGTGACGTGTGATGATTTGATTTTACCAGCTAATCCATCAGATAATACAACAAGAGAATTTGAAGTAAGAAAGCATGAAGATCAAGATGAAAAACATGCAGTTTCAACTGAAATTCAGGAAAATCAAGAATCGCATAAAGTTGATGGAGAAGTGCAAGaagtatcagaaaaaaatcaggATGCACAAGACGAACTTGAAGAAATAACCATCAAAGAAAATGGTTATCAGACAAAAATACAAGAGGAATTGAACGAAATTCAACAACTGGCAATGCATGAACATGATTACGTAGAATCACAGTTGGTTGGTACCATAGAGGAAAAACACGATAACAAATGCCAAACTGGAAAGAAATTGGTAAAAGAGAATCTTAGGCACGTAAATGTGCAAGAAGCACCTATTTTGAATGAATCGATTCGAAGAAGCAAACGTAAGTTAGTACAACAAAAATCTCCTGCTCGTATATCCTCCGATGAAGAAagctattttgaaaatttaaatcttaGCTGTCGATTGAAAAGGGTCcaagaaaaatctgaaaaaatttattttttatgctattggTGTGACAAGCAATATTTGTCGAGAGAAATCCTAAGAGAGCACATGTTTTCTCATGAGGAAGTGAAAAAAACTCTATCTCTTGTTGGCaaatctgttgaaaaaatgCAACTTCGCAAAACATCAGAAAAATCTTCCAGTACAACTTTTAGTCCTAGCACATTAAAACCACCGTTGAGTGGAAAAAAAGTCAACACTTGCCCACACTGTGGCAAAGAGTATCTGTATGTGatatcttataaaaaacatttgaaacaGCACAGAAAGGAAATAAAAGCTTCGAAAGAAGTCTCAATGCCTTTGGAAGTTACAGTCTGCAGAGATGAAGATGATTTAGATTTTCATAGTTTTGATgacacttgtgctattaattcCGATAGCGATAATGAAAAGTCAAAggctgaaaaattaaaagaagaagaagaagaagaagaaatagaaCACAGGCAAAGTATCGATACACCGGAAAAGTATGAAGAAGATGAGGCTGAAAATATTCTTATCAGACTGAAATCAAAGAGAGATTTGTcagcagttgaaaaaaataacgtactGAAGCAAAAAGATGAATCGACAACGAAATTCAGGTGCTTGTATTGCCCGTACACTTTTAATCATGAAAAGGCGCTAACTTTGCATCTTAAAATTCACAAAGAACATTGCGAATTGGAGTGTACAAGTGAGCCGCCAGGCAATAGTCAACCCAAAGATTATTGCTGCAACGACTGTGGCAAGAACTTCGGCATGGAGCTCATGCTCAGGAATCACTTGATTGCAACTGGTCATAGGACAACTGTTGAAGGTGAACAGTACGATTTAAGTAAGAGAATTAAGAGAGTAGCTGCTAAGGCTGCTCTAAAGGTCATCGATAAAATAAAGACGGATCTAGATTGTGAGGGATCGGACGATGAAAGAAGTATTAAAAACGAAGCTAAGGATGCAGATTTTGATGTGCATTCAGAAATGAcggagaaaattaaaattacaacagACCTAAGGGAACATGAGTCACCCGCATCCAGAAACAAAGTGCTGTTTTGCGCGACTTGCAATCAAAAGTGCTCGTCTAAGCAAGCCCTGACAAAACACATGGAGCAGCACACAAAGGAAGAGAACTCCACGAAGCAGGAAAATTCCGATGACGGGGACATgaaagatgacgatgattatggtATCGATGATTGGCCAATGGACAACTACGAATGCCCGACCTGCAAGAAAAAGTACAGCACGAAGAAGTCGTTATTGCGTCACCAGCTGCTGCATGAAGAACCAAACTTCGAGTGTGATATTTGCAGTATAAAGTTTCATCGGAAAGATAAGCTCAAGGCCCACTACGACAAATGCTCGGAAAAGAATCCAGACCAAGTACGAAAATGCAATATTTGTAATGACATCTTCAAAAACAACGAGGTGTTGAAGGAACACCGCCTCAAGCACGTGGCTGAGGGTATTCTAACCGAGGAAGACCTCCTGGAAATGGACCCAAAACCCGAGGAGAAGAGCGAAGATAAGGGTACCCGCAAGAGGCGTACCGACATCGTTGGCCTTGAGTGCACCGAGTGCAACAAACGGTATACCTCGAGGAAAGGACTATTGAGGCATTTGCAGGTGCACGAGGGCAAAAAATTCCTATGCGACATGTGCCCCAAAAAGTTCTACAGGCGAGAACATCTGAAGATTCACGTGGCCAAGCACAACATAGTCAAACCGTACAAGTGTCACAAATGTCCAAAGCGTTTCATCAAAGAGGAACTGCTGAACAACCATCTGCTGAAGCACGATCGAGTCCCAAGGAAGCCAAAAGAAAGCACGAACGATGGCACCAAACGCTTTCTCTGCGAGATCTGCTCCAAGAGCTTCACGCAATCAACGACCTTGGTTGCCCATTTGCGCGCCCACAATGGCATCAAGCCCTACGTTTGCGATGTTTGTTCGAGGCCCTTCACCACTAACGCCTACCTCAAGATGCACATGCGTACGCACACCCAGGAACGGCCGTACATCTGCCAGTACTGCTCGCGAGCTTTTGCCCGAGCGGACACCCTGGCCAATCACTTGACCTCGCACACGGGTGAAGCCAAGTACCATTGTAAGTTTTGCCCGAAGCACTTCAGGAGGCTCAAGTCCCTCAAAGAGCACGTATTCATCCATACAGGCCAGCGACCCTACGCCTGTCCTACCTGCGACCGCAAGTTCAACAACAATGGCAGCAGATACGCTCACAGCAAGCGCTGCAAACAGCACAATGAACAACAGACGTCCCAATCTGGAGCCATCATGCATGATATTGGCATCGACTCGGAGGAGCAGGCACAAATTGTGATGATGACTGAAGAACaggagagagaggaggaggagcagcagctgcagcagcaCCAGGAGGAGGATGGGGAAGGGAACGTAGCCCAATTGCATTTGATCAACGAGGCAGATTTACAGGTGGGTCACGTGACACAGCACCAAGTGGTCCAGAGGATAGACGCGGTGGCCACCGGACAGATCCTCAAGCCACAGAGCATCAAGACTATTACCTTAGCGAGGCCGGTCGATGGTTCGCTTGGCCAGCAGCACGTCGTGGGTCAAGAGATTCTCATGCCTCTGATATTGCCGTTCACGGTTACGCTCGGCGAAGTTGGCGATGAGGTTATTTTGTCCGAGGATACGAAAATTTTCACCACTTAA
Protein Sequence: MSKFEDTSVYTTDHGEIPQMDVCRVCLEEAPTMVDLFYKDSVLSLADRLMFLSNVKVAPDDGLPSQICCECGDKLDLSYKFKLQVEESHAILKEKFDSFNVKQEFFFHDADVNISCDENVEDVTCDDLILPANPSDNTTREFEVRKHEDQDEKHAVSTEIQENQESHKVDGEVQEVSEKNQDAQDELEEITIKENGYQTKIQEELNEIQQLAMHEHDYVESQLVGTIEEKHDNKCQTGKKLVKENLRHVNVQEAPILNESIRRSKRKLVQQKSPARISSDEESYFENLNLSCRLKRVQEKSEKIYFLCYWCDKQYLSREILREHMFSHEEVKKTLSLVGKSVEKMQLRKTSEKSSSTTFSPSTLKPPLSGKKVNTCPHCGKEYLYVISYKKHLKQHRKEIKASKEVSMPLEVTVCRDEDDLDFHSFDDTCAINSDSDNEKSKAEKLKEEEEEEEIEHRQSIDTPEKYEEDEAENILIRLKSKRDLSAVEKNNVLKQKDESTTKFRCLYCPYTFNHEKALTLHLKIHKEHCELECTSEPPGNSQPKDYCCNDCGKNFGMELMLRNHLIATGHRTTVEGEQYDLSKRIKRVAAKAALKVIDKIKTDLDCEGSDDERSIKNEAKDADFDVHSEMTEKIKITTDLREHESPASRNKVLFCATCNQKCSSKQALTKHMEQHTKEENSTKQENSDDGDMKDDDDYGIDDWPMDNYECPTCKKKYSTKKSLLRHQLLHEEPNFECDICSIKFHRKDKLKAHYDKCSEKNPDQVRKCNICNDIFKNNEVLKEHRLKHVAEGILTEEDLLEMDPKPEEKSEDKGTRKRRTDIVGLECTECNKRYTSRKGLLRHLQVHEGKKFLCDMCPKKFYRREHLKIHVAKHNIVKPYKCHKCPKRFIKEELLNNHLLKHDRVPRKPKESTNDGTKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCDVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKFCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRKFNNNGSRYAHSKRCKQHNEQQTSQSGAIMHDIGIDSEEQAQIVMMTEEQEREEEEQQLQQHQEEDGEGNVAQLHLINEADLQVGHVTQHQVVQRIDAVATGQILKPQSIKTITLARPVDGSLGQQHVVGQEILMPLILPFTVTLGEVGDEVILSEDTKIFTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -