Cflr002666.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:3778289-3780127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0047 0.2 11.6 10.0 1 23 13 35 13 35 0.96 2 21 8.5e-06 0.00036 20.2 2.6 1 23 41 63 41 63 0.99 3 21 0.00095 0.04 13.8 5.6 1 23 69 91 69 91 0.99 4 21 4.9e-06 0.00021 21.0 2.8 1 23 97 119 97 119 0.98 5 21 0.0017 0.071 13.0 5.3 1 23 125 147 125 147 0.99 6 21 1.4e-05 0.00058 19.6 3.5 1 23 153 175 153 175 0.98 7 21 0.00089 0.037 13.9 5.4 1 23 181 203 181 203 0.98 8 21 2.1e-05 0.00086 19.0 5.4 1 23 209 231 209 231 0.99 9 21 1.1e-05 0.00046 19.9 4.5 1 23 237 259 237 259 0.99 10 21 0.00033 0.014 15.2 3.6 1 23 265 287 265 287 0.98 11 21 0.0021 0.088 12.7 4.4 1 23 293 315 293 315 0.98 12 21 0.0003 0.013 15.3 3.6 1 23 321 343 321 343 0.99 13 21 3.3e-06 0.00014 21.5 0.9 1 23 349 371 349 371 0.98 14 21 0.00012 0.0052 16.6 4.4 1 23 377 399 377 399 0.98 15 21 4.8e-05 0.002 17.9 5.2 1 23 405 427 405 427 0.98 16 21 6e-05 0.0025 17.6 5.1 1 23 433 455 433 455 0.98 17 21 1.1e-05 0.00046 19.9 4.5 1 23 461 483 461 483 0.99 18 21 0.00023 0.0096 15.7 3.5 1 23 489 511 489 511 0.98 19 21 0.0017 0.072 13.0 6.9 1 23 517 539 517 539 0.98 20 21 0.0082 0.35 10.8 4.9 1 23 545 568 545 568 0.97 21 21 0.0032 0.13 12.1 1.2 1 23 574 597 574 597 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGGGCTAGTGGTACTTCCTCAGAACGTTCCCATTGTTGCGACAGGTgtggaaaaacttttcattcGGTTTCTCATCTCAAGATACACAATCGCACTCATACGGGCGAAAGACCTTTTACCTGCCAAGTATGTGCTCAGACTTTTACCCGAAAGGCCCATCTTACGGAGCACGAGCGAACACATACAAAAGAGAGACCTTTTACCTGCCAATTCTGTACTCGGACTTTTGCCTGCAAGTCCAATCTTACAAATCATGAGCGAACGCATACGGGCGAGAGGCCATTTATCTGCCAAGTCTGTACTCAGACTTTTACCCGAAAGGCCCATCTTACGGAGCACGAGCGAACACATACAAAAGAGAGACCTTTTACCTGCCAATTCTGTACTCAGACTTTTGCCTGCAAGTCCAATCTTACAAATCATGAGCGAACGCATACGGGCGAGAGGCCATTCATCTGCCAATTCTGTCATCAAACTTTTGCCCAAAAGTCTACTCTTAGGGTTCATGAGCGAACGCATACGGGCGAGAGGCCATTTATCTGCCAATTCTGTACTCGGACTTTTGCCTGCAAGTCCAATCTTAGAAAGCATGAGCGAACACATATGGGCGAGAGACCCTACAAGTGCAAATTCTGTTCTCAGATTTTTACCCAAAAGGCACATCTTACGAAGCACGAGAAAACCCATACGGAGGAGAAGCCATTTACCTGCCAATTCTGCCATCAGACTTTTGCCCAAAAGTCTACTCTTAGGGTTCATGAGCGAACGCATACGGGCGAGAGGCCATTTATCTGCCAAGTCTGTACTCAGACTTTTGCCTGCAAGTCCAATCTTACAAAGCATGAGCGAACACATATGGGCGAGAGGCCATTCATCTGCCAATTCTGTACTCAGACTTTTGCCTGCAAGTCCAATCTTACAAATCATGAGCGAACGCATACGGGCGAGAGGCCATTTACCTGCCAATTCTGCCATCAGACTTTTACCCAAATGTCTACACTTGGGGTTCATGAGCGAACGCATACGGACGAGAGGCCATTTATCTGCCAAGTCTGTACTCAGACTTTTGCCCAAAAGTCTACTCTTAGGGTTCATGAGCGAACGCATACGGGTGAGAGGCCATTTATCTGCCAAGTCTGTCAAAAATCATTTGCATTGAAACATCATCTTACAGATCATAGGCTAACACATACGGGCGAGAGGCCATTTACCTGCCAATTCTGCCATCAGACTTTTGCCCAAAAGTCTAAACTTAGAGTTCATGAGCGAAAGCATATGGGCGAGAGACCATTTGTCTGCCAAGTCTGTCAAAAAACATTTGCATTGAAACATCATCTTACAAATCATAGGCTAACACATACGGGCGAGAGGCCATTTACCTGCCAATTCTGCCATCAGACTTTTGCCCAAAAGTCTACTCTTAGGGTTCATGAGCGAACGCATACGGGCGAGAGGCCATTTATCTGCCAAGTCTGTACTCAGACTTTTGCCTGCAAGTCCAATCTTACAAGGCATGAGCGAACACATATGGGCGAGAGGCCATTCATCTGCCAATTCTGCCATCAGACTTTTGCCTGCAAGTCCAATCTTACAAGGCATGAGCGAACACATACGGGCGAAAGGCTCTTCAACTgcaaattttgtcaaaaaacgtATGAATGCAAGTCTGATCTTATACAGCATCAGCAAACACAACATGTGATTTTGAAAATCTACCACTGTGCCATGTGTCCACAAGCTTTCACGAAAAAAATCATCCTTAAGAAGCACCTGCAGACTATCCACTCGGACGAGATGCCCCACTGCAGTGCAAGGTTTTTAGCAACTTCATAA
- Protein Sequence
- MERASGTSSERSHCCDRCGKTFHSVSHLKIHNRTHTGERPFTCQVCAQTFTRKAHLTEHERTHTKERPFTCQFCTRTFACKSNLTNHERTHTGERPFICQVCTQTFTRKAHLTEHERTHTKERPFTCQFCTQTFACKSNLTNHERTHTGERPFICQFCHQTFAQKSTLRVHERTHTGERPFICQFCTRTFACKSNLRKHERTHMGERPYKCKFCSQIFTQKAHLTKHEKTHTEEKPFTCQFCHQTFAQKSTLRVHERTHTGERPFICQVCTQTFACKSNLTKHERTHMGERPFICQFCTQTFACKSNLTNHERTHTGERPFTCQFCHQTFTQMSTLGVHERTHTDERPFICQVCTQTFAQKSTLRVHERTHTGERPFICQVCQKSFALKHHLTDHRLTHTGERPFTCQFCHQTFAQKSKLRVHERKHMGERPFVCQVCQKTFALKHHLTNHRLTHTGERPFTCQFCHQTFAQKSTLRVHERTHTGERPFICQVCTQTFACKSNLTRHERTHMGERPFICQFCHQTFACKSNLTRHERTHTGERLFNCKFCQKTYECKSDLIQHQQTQHVILKIYHCAMCPQAFTKKIILKKHLQTIHSDEMPHCSARFLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -