Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:1709457-1720701[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00013 0.0054 16.5 1.1 1 23 438 460 438 460 0.96

2 18 6.1e-05 0.0025 17.5 1.3 1 20 466 485 466 488 0.94

3 18 3.6e-05 0.0015 18.2 0.7 1 23 494 516 494 516 0.98

4 18 5e-05 0.0021 17.8 4.4 1 21 522 542 522 544 0.95

5 18 2.8e-05 0.0012 18.6 4.6 1 23 550 572 550 572 0.99

6 18 5.4e-05 0.0023 17.7 5.0 1 23 578 600 578 600 0.97

7 18 1.1e-05 0.00044 19.9 7.1 1 23 606 628 606 628 0.97

8 18 1e-07 4.3e-06 26.3 2.7 1 23 634 656 634 656 0.98

9 18 7.6e-05 0.0032 17.2 6.7 1 23 662 684 662 684 0.97

10 18 2.4e-05 0.00099 18.8 5.8 1 23 690 712 690 712 0.98

11 18 6.3e-07 2.6e-05 23.8 2.9 1 23 718 740 718 740 0.98

12 18 9.3e-06 0.00039 20.1 7.8 1 23 746 768 746 768 0.98

13 18 2.9e-05 0.0012 18.5 9.1 1 23 774 796 774 796 0.98

14 18 3.8e-05 0.0016 18.2 7.5 1 23 802 824 802 824 0.98

15 18 0.0011 0.046 13.6 8.8 1 21 830 850 830 852 0.94

16 18 1.4e-05 0.00059 19.5 0.4 1 23 858 880 858 880 0.98

17 18 0.015 0.64 10.0 5.3 1 23 890 912 890 912 0.98

18 18 3.1e-07 1.3e-05 24.7 1.3 1 23 918 940 918 940 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00013	0.0054	16.5	1.1	1	23	438	460	438	460	0.96
2	18	6.1e-05	0.0025	17.5	1.3	1	20	466	485	466	488	0.94
3	18	3.6e-05	0.0015	18.2	0.7	1	23	494	516	494	516	0.98
4	18	5e-05	0.0021	17.8	4.4	1	21	522	542	522	544	0.95
5	18	2.8e-05	0.0012	18.6	4.6	1	23	550	572	550	572	0.99
6	18	5.4e-05	0.0023	17.7	5.0	1	23	578	600	578	600	0.97
7	18	1.1e-05	0.00044	19.9	7.1	1	23	606	628	606	628	0.97
8	18	1e-07	4.3e-06	26.3	2.7	1	23	634	656	634	656	0.98
9	18	7.6e-05	0.0032	17.2	6.7	1	23	662	684	662	684	0.97
10	18	2.4e-05	0.00099	18.8	5.8	1	23	690	712	690	712	0.98
11	18	6.3e-07	2.6e-05	23.8	2.9	1	23	718	740	718	740	0.98
12	18	9.3e-06	0.00039	20.1	7.8	1	23	746	768	746	768	0.98
13	18	2.9e-05	0.0012	18.5	9.1	1	23	774	796	774	796	0.98
14	18	3.8e-05	0.0016	18.2	7.5	1	23	802	824	802	824	0.98
15	18	0.0011	0.046	13.6	8.8	1	21	830	850	830	852	0.94
16	18	1.4e-05	0.00059	19.5	0.4	1	23	858	880	858	880	0.98
17	18	0.015	0.64	10.0	5.3	1	23	890	912	890	912	0.98
18	18	3.1e-07	1.3e-05	24.7	1.3	1	23	918	940	918	940	0.98

Sequence Information

Coding Sequence: atgaACAGTGAGCAGCATGCTCTGCCAGCGACAACGCAGGCTCAGCAAGAgGAAGTAAGCGCAGCTCAGAGCGGTCGCTCCTCATATCCAGGTGCCACTAATACTCTAGCCGCAGCAGTTAGCCAACAACAGCAGCCAACCTCATCAGCTAGTCTAACCAACTCCTCCGCGACGGAGCTGCGAGTAGGTACGACAAATGCTGTGGCCATAGCTAATCACCTGACCAAGTACCTCGTCCTCACCAATCTCTTTCCGGGACCGGTGTCGGTTTACCATCATCTACCACATCATAGAGGCGGTGCTGCCGAGCAGCAgggtggtaataataataaggaatctGGAAATCTGATCAGCCAGGACATGTCGCTGGCTTCGGGGACCCATCATCAGGCGTCCACGGCACTGCATCATCATCAGGCTAATGTTGGTAAAACTGGCCATCATACTTCTCTCCAGTCTGCTACCCAGattCCAGTCTCTCTACCAGGGCTCACTTTAGATGGAAGTCACTTGCAGGCGAGCGTTAGTCACCTGCAAGCAGCAGCAGCTCATGCTCAAATACAGCAGATGCAAACGCAACAGCAGCAAGCACAGTTGcaccaacaacagcaacagcaagcTCATCATCAACTTCAGAACCATCAAACCCAAGCTGGCCAAAATCAAAGGGATGACAAGATTAAGGAGGACCCATCCGAAAGACACGAGAATCAGGTGCATGCCCACGTTCAGAATGAACACCATCAGCATCAGCAAGCGCAAGATTTGCAACAGAATCTGATGcatcagcagcaacaacagcagcaaatCACAGTTACTCTAGGTAACTCGGTTGTGGATGCTAGTTCTGTCAGAATCGAAAAgattgagaaaaaagaagatattcGGCAGTTAAACATGACTCAGTTTCAAGTGCCCGACCTTAAGTCAGGAAGCCACCTGATGGATGTCCGAACTGCAGATGGATCGATTGTTAAGATTAGTGCGGCGAGCGATCAAGATATCGCAAAAACCTTAAGTGTTGATATATCCCAGTATATCAACAAGGTAAATTTTCCAACATCGggAGCTGTAAATGTCGAGGAGCTGAATCAGTTAAACCAATTGTTGGCCTATCATGAAGTATTTGGTAAACTGCAAGGCGATGGAAATACGACATTAATCGGTAGTACGATACCGACGCAAACGGTCACGACGATGCAAAACGGCACACCTGTCGCGCAGCAAGTGCAGCTCAACAAGTTCGAAATCAAAACGAGCGACGGTGAGGCTACGCCTGGACCAAGCGCCTCACCTGTCTCGGCAGGCAGCCACGCCTGCGAGGTGTGTGGAAAGATTTTTCAATACCGGTACATGCTAATCGTGCATAGGAGATATCACACCGAAAGAAAGCCTTTTACGTGTCAGGTTTGCGGCAAAGCGTTTAACACTGCGCCTGATCTAACGCGACATGGTAAATGTCACTTGGGTAATTCCATGTTTACATGTGCAGTCTGCTTCCATGTGTTTGCTAATGCTCCGTCTCTTGAACGGCACATGAAGCGTCACGCTACGGAAAAGCCGTACAACTGTACTATTTGTGGCAAAAGCTTTGCAAGGAAAGAACATTTAGATAATCATACTAGGTGTCATACAGGAGAAACTCCGTACAGATGCCAATACTGCGCAAAAACGTTCACGCGCAAAGAACACATGGTGAACCACGTGCGTAAGCACACGGGCGAAACGCCGCATCGCTGCGACATCTGCAAGAAGTCGTTCACGCGAAAGGAACACTACCTAAACCACGTGATGTGGCACACTGGTGAGACGCCCCACCATTGTCAAGTATGCGGCAAAAAGTATACGCGCAAGGAACACCTGGCCAACCACATGCGTTCGCATACTAACGACACGCCCTTCCGCTGCGAAATTTGTGGCAAATCGTTCACGCGCAAGGAGCATTTTACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGCTGCGACTTCTGTTCAAAGACATTCACGCGCAAGGAGCACCTGCTTAATCACGTCAGACAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCGTTTACGCGCAAGGATCACCTGGTAAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAGTCGCCGCATCGCTGTCACTTCTGCTCCAAGTCTTTCACCCGCAAGGAGCACCTGACGAATCACGTGCGCATCCATACGGGCGAGTCGCCGCATCGCTGCGAGTTCTGCCAGCGCACCTTTACCCGCAAGGAGCACCTCAACAATCATCTCAGGCAACACACCGGTGACTCGTCCCACTGCTGCAACGTTTGCTCCAAGCCCTTCACGCGCAAGGAACATTTGATAAACCACATGCGCTGCCACACGGGTGAGCGGCCGTTTGTTTGTACCGAGTGCGGCAAAAGTTTTCCGCTAAAGGGCAACCTGCTCTTCCACATGCGCTCGCACAACAAGGGCAGCCAAGCCGAACGGCCGTTCCGCTGCGACATTTGCAACAAGGATTTCATGTGCAAAGGCCACCTTGTCTCGCACCGTCGTTCGCACTCCGACGAGCGGCCACACACCTGTCCCGATTGCGGCAAAAGCTTCGTCGAGAAGGGCAACATGCTACGCCACTTGCGTAAACACGCTGCCGAAGGTCCACCCTCTCAGATCAGCAGCGCGGCCTCGGTGCTTGCTGCCGCGGCCCAGCAGCAGTCTACGGTCAGCGGAGCCGCGACGGCCACTGTACTGCCGATACCGCCCAGTGCGGCTGCTGCCGCGGCTGCTGTTTTGGTTGGACACCCTCTGGCGCCACCGCCTGTCCCTGCTGTCGCTTTGCCCCAACACACCGTCGTCGTGCCCACGCCACCAGGCGTACTCGCATCTTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVSAAQSGRSSYPGATNTLAAAVSQQQQPTSSASLTNSSATELRVGTTNAVAIANHLTKYLVLTNLFPGPVSVYHHLPHHRGGAAEQQGGNNNKESGNLISQDMSLASGTHHQASTALHHHQANVGKTGHHTSLQSATQIPVSLPGLTLDGSHLQASVSHLQAAAAHAQIQQMQTQQQQAQLHQQQQQQAHHQLQNHQTQAGQNQRDDKIKEDPSERHENQVHAHVQNEHHQHQQAQDLQQNLMHQQQQQQQITVTLGNSVVDASSVRIEKIEKKEDIRQLNMTQFQVPDLKSGSHLMDVRTADGSIVKISAASDQDIAKTLSVDISQYINKVNFPTSGAVNVEELNQLNQLLAYHEVFGKLQGDGNTTLIGSTIPTQTVTTMQNGTPVAQQVQLNKFEIKTSDGEATPGPSASPVSAGSHACEVCGKIFQYRYMLIVHRRYHTERKPFTCQVCGKAFNTAPDLTRHGKCHLGNSMFTCAVCFHVFANAPSLERHMKRHATEKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYLNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDICNKDFMCKGHLVSHRRSHSDERPHTCPDCGKSFVEKGNMLRHLRKHAAEGPPSQISSAASVLAAAAQQQSTVSGAATATVLPIPPSAAAAAAAVLVGHPLAPPPVPAVALPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00368244;
90% Identity: iTF_00368244;
80% Identity: -